Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_C12
(1000 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.19
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.44
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.44
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPP 849
P PPPP PP P PP PPP
Sbjct: 11 PPPPPPGFEPPSQP----PPPPPP 30
Score = 29.9 bits (64), Expect = 0.59
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPP 849
P PPP PP + PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.44
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPPXEA 858
P PPP P P PP PPP A
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Score = 29.9 bits (64), Expect = 0.59
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +1
Query: 778 PXPPPPXXNPPXX-PXXAXPPXPPPXEAXXAXXXXXKTGXGISPPXGKAGRPP 933
P P P PP P PP PPP EA K G+ P + PP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV----PKPSVGVPPVPPPSTAPP 1218
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +1
Query: 775 APXPPPPXXNPPXXPXXAXPPX-PPPXEAXXAXXXXXKTGXGISPPXGKAGRPP 933
AP P P PP + P PPP A + G P +G PP
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/51 (25%), Positives = 14/51 (27%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPPXEAXXAXXXXXKTGXGISPPXGKAGRP 930
P PPP P P PP P P +S P P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPPXEAXXAXXXXXKTGXGISPPXGKAGRPP 933
P P P PP PP P P A K + P +G PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKP---SVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +1
Query: 775 APXPPPPXXNPP-XXPXXAXPPXPPPXEAXXAXXXXXKTGXGISPPXGKAGRPP 933
AP P P PP P A PP P P K G+ P + PP
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSS---GIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPP 849
P P P PP P PP P P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 25.8 bits (54), Expect = 9.5
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXP------PPXEAXXAXXXXXKTGXGISPPXGKAGRPP 933
P P P P P A PP P PP A K P +G PP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 25.8 bits (54), Expect = 9.5
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Frame = +1
Query: 775 APXPPPPXXNPPXX-PXXAXPPXPPPXEA------XXAXXXXXKTGXGISP-PXGKAGRP 930
AP P P PP P A PP P P A A GI P P AG P
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 931 P 933
P
Sbjct: 1190 P 1190
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 778 PXPPPPXXNPPXXPXXAXPPXPPPXEAXXA 867
P PPPP PP PP PPP A A
Sbjct: 761 PPPPPP---PPGVAGAGPPPPPPPPPAVSA 787
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +1
Query: 778 PXPPP-PXXNPPXXPXXAXPPXPPP 849
P P P P PP P PP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 775 APXPPPPXXNPPXXPXXAXPPXPPP 849
+P PPPP P P A P PPP
Sbjct: 731 SPPPPPPAVIVPT-PAPAPIPVPPP 754
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +1
Query: 775 APXPPPPXXNPPXXPXXAXPPXPPPXEAXXAXXXXXKTGXGISPPXGKAGR 927
AP PPPP P P A P P A G+ P G+
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGK 1931
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 775 APXPPPPXXNPPXXPXXAXPPXPPP 849
AP PPPP + P P P PP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 766 RXXAPXPPPPXXNPPXXPXXAXPPXPPP 849
R +P PP P A PP PPP
Sbjct: 217 RAVSPEIPPTYTPKQADPLPAPPPPPPP 244
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 775 APXPPPPXXNPPXXPXXAXPPXPP 846
AP PPPP PP A P PP
Sbjct: 2 APAPPPP---PPAPAPAAAAPAPP 22
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +1
Query: 766 RXXAPXPPPPXXNPPXXPXXAXPPXPPPXEAXXAXXXXXKTGXGISPPXGKAGRP 930
R P P P PP P P PP I+PP AG P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL-PAGMP 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,117
Number of Sequences: 5004
Number of extensions: 17157
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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