Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C12
         (1000 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   2.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
 Frame = +1

Query: 775 APXPPPPXXNPPXXPXXAXPP----XPPPXEAXXAXXXXXKTGXGISPPXG 915
           AP P P     P  P    PP     PPP     A      +   ISP  G
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 832 PPXPPPXEAXXAXXXXXKTGXGISPP 909
           PP PPP     +      +G G  PP
Sbjct: 52  PPGPPPNNEDSSGVIVGASGYGFVPP 77


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 905 GEXPXPVFXXXXXAXXASXGGGXGGXA 825
           GE   P+F        AS GG  GG A
Sbjct: 579 GEVTTPLFTPAVGVAAASAGGAGGGGA 605


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 410  PPPXPPPXXXG 378
            PPP PPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,323
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)