Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_C09
(911 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;... 205 1e-51
UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit R... 157 5e-37
UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit R... 147 3e-34
UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit R... 120 4e-26
UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit R... 117 4e-25
UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1; ... 116 8e-25
UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6; Ascom... 114 3e-24
UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3; Chrom... 112 1e-23
UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 109 1e-22
UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2; Param... 104 3e-21
UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 95 2e-18
UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit R... 90 6e-17
UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subun... 89 1e-16
UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 87 6e-16
UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella ve... 87 6e-16
UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1; Encep... 86 1e-15
UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase subu... 79 2e-13
UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subun... 78 3e-13
UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1; Trich... 78 4e-13
UniRef50_Q74NB5 Cluster: NEQ173; n=1; Nanoarchaeum equitans|Rep:... 77 5e-13
UniRef50_Q8TXI6 Cluster: DNA-directed RNA polymerase second-larg... 77 8e-13
UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guill... 75 3e-12
UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 72 2e-11
UniRef50_Q58444 Cluster: DNA-directed RNA polymerase subunit B''... 65 3e-09
UniRef50_A0RXX0 Cluster: DNA-directed RNA polymerase, beta subun... 64 4e-09
UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79; Magn... 63 8e-09
UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm... 63 1e-08
UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6; Plasm... 61 3e-08
UniRef50_P15352 Cluster: DNA-directed RNA polymerase subunit B''... 60 8e-08
UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellu... 59 1e-07
UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giard... 58 4e-07
UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide... 58 4e-07
UniRef50_Q91F97 Cluster: 428L; n=1; Invertebrate iridescent viru... 57 5e-07
UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3; Arabi... 57 5e-07
UniRef50_P41558 Cluster: DNA-directed RNA polymerase subunit B''... 56 9e-07
UniRef50_P11513 Cluster: DNA-directed RNA polymerase subunit B; ... 56 1e-06
UniRef50_UPI0000E487B4 Cluster: PREDICTED: similar to Polymerase... 55 3e-06
UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza... 54 4e-06
UniRef50_Q7SXI3 Cluster: Zgc:66298 protein; n=1; Danio rerio|Rep... 52 2e-05
UniRef50_Q197F1 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q5CPZ8 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 52 2e-05
UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 52 2e-05
UniRef50_Q7QXS5 Cluster: DNA-directed RNA polymerase; n=1; Giard... 52 2e-05
UniRef50_Q236N3 Cluster: DNA-directed RNA polymerase, beta subun... 50 8e-05
UniRef50_Q9NW08 Cluster: DNA-directed RNA polymerase III subunit... 49 1e-04
UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1; Phaeo... 49 2e-04
UniRef50_UPI000065EBB2 Cluster: DNA-directed RNA polymerase III ... 48 3e-04
UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 48 3e-04
UniRef50_Q54IZ9 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 48 3e-04
UniRef50_Q6DRH1 Cluster: RNA polymerase II subunit B; n=10; Euka... 47 6e-04
UniRef50_Q4Q6P8 Cluster: DNA-directed RNA polymerase II subunit ... 47 8e-04
UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1; Encep... 46 0.001
UniRef50_A5DHT2 Cluster: DNA-directed RNA polymerase II subunit ... 46 0.001
UniRef50_P08266 Cluster: DNA-directed RNA polymerase II subunit ... 46 0.001
UniRef50_Q98RY5 Cluster: DNA-directed RNA polymerase; n=1; Guill... 45 0.002
UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B; ... 44 0.005
UniRef50_P30876 Cluster: DNA-directed RNA polymerase II subunit ... 44 0.005
UniRef50_Q06VE3 Cluster: RNA polymerase subunit; n=3; Ascovirus|... 42 0.017
UniRef50_P08518 Cluster: DNA-directed RNA polymerase II subunit ... 42 0.017
UniRef50_UPI00004998DA Cluster: DNA-directed RNA polymerase subu... 42 0.022
UniRef50_Q4A245 Cluster: Putative DNA-directed RNA polymerase II... 42 0.022
UniRef50_A3AIW8 Cluster: Putative uncharacterized protein; n=2; ... 42 0.022
UniRef50_Q1L6B6 Cluster: RNA polymerase II second largest subuni... 41 0.050
UniRef50_Q4ZJA8 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 40 0.12
UniRef50_O96236 Cluster: DNA-directed RNA polymerase; n=10; Euka... 39 0.15
UniRef50_Q7QSN9 Cluster: DNA-directed RNA polymerase; n=2; Giard... 38 0.27
UniRef50_Q4U9X1 Cluster: DNA-directed RNA polymerase; n=26; Euka... 38 0.36
UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subun... 38 0.47
UniRef50_Q5KIB7 Cluster: DNA-directed RNA polymerase; n=72; Euka... 36 1.1
UniRef50_Q9LK40 Cluster: DNA-directed RNA polymerase; n=29; Sper... 36 1.4
UniRef50_Q3LW27 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 35 2.5
UniRef50_Q23G41 Cluster: DNA-directed RNA polymerase, beta subun... 34 4.4
UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6; Trypa... 34 5.8
UniRef50_A2E7H8 Cluster: DNA-directed RNA polymerase; n=1; Trich... 34 5.8
UniRef50_Q60J73 Cluster: Putative uncharacterized protein CBG246... 33 7.7
UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3; ... 33 7.7
>UniRef50_UPI0000D5791C Cluster: PREDICTED: similar to CG4033-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4033-PA - Tribolium castaneum
Length = 272
Score = 205 bits (501), Expect = 1e-51
Identities = 98/188 (52%), Positives = 129/188 (68%), Gaps = 1/188 (0%)
Frame = +2
Query: 170 LAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELP 349
+ PSL+ + P++ +PP+ N LQ LG PH+ SFNYM++ GL AI+DL P EF +
Sbjct: 1 MLDEPSLSNITDPNFGRPPESQNVLLQQLGHPHVSSFNYMINQGLDQAISDLNPVEF-MV 59
Query: 350 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RS 526
+G+K+ + I +A+ + P VPM TVGVKS V P+ECRQRAATYKG RV I+G R
Sbjct: 60 NGDKITLEITDASLSCPLVPMGTVGVKSPKVFPSECRQRAATYKGRFIARVNWAINGERQ 119
Query: 527 VTIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRR 706
++ +G LPIMI S CH + +SP EL++ EH EWGGYFV+ G ERL RMLL+TRR
Sbjct: 120 TAFDKDMGQLPIMIKSNKCHLSAMSPAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRR 179
Query: 707 XYPVAIKR 730
YP+AIKR
Sbjct: 180 NYPIAIKR 187
>UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=5; Endopterygota|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Drosophila melanogaster
(Fruit fly)
Length = 1129
Score = 157 bits (380), Expect = 5e-37
Identities = 68/178 (38%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
Frame = +2
Query: 200 SHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTID 379
S P++++ PK + +L +LG PH+DSF+ ML GL + ++P+ + P+GEK+ + ++
Sbjct: 17 SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVE 76
Query: 380 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYL 556
AKP VP D + V+++ + PT+ RQ +Y G +R+ ++G + I LG +
Sbjct: 77 SIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEV 136
Query: 557 PIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
PIM+ SK C+ +PEE+++ EH EWGG FVI G E++ RML++TRR +P+ +KR
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKR 194
>UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=53; Coelomata|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Homo sapiens (Human)
Length = 1135
Score = 147 bits (357), Expect = 3e-34
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 343
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 344 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 523
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 524 SV-TIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVT 700
S I++ LGY+PIM+ SK+C+ +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 701 RRXYPVAIKR 730
RR +P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=14; Ascomycota|Rep: DNA-directed RNA polymerase
I subunit RPA2 - Neurospora crassa
Length = 1234
Score = 120 bits (290), Expect = 4e-26
Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 16/221 (7%)
Frame = +2
Query: 212 YRKPP--KIANPYLQSLGAPHIDSFNYML-DDG----LKFAIADLLPSEF------ELPS 352
+R PP + A P LQ+ PHI+SFN + DDG L A+A++ F P
Sbjct: 26 FRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERADPQ 85
Query: 353 GE-KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DGRS 526
G+ K+ + K VP K++ + P ECR+R +Y+G+L I DG
Sbjct: 86 GKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDGEP 145
Query: 527 VTIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRR 706
R LG +PIM+ S CH + SP +L+ + E ++E GGYF++ G E+L RMLLV RR
Sbjct: 146 HEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLLVNRR 205
Query: 707 XYPVAIKRVRMERCPAXSSHTXXY*YVAS-PPDQTSXNNVL 826
+P+AI R + +S+T + S PD+TS NVL
Sbjct: 206 NFPLAIVRPSFQN--RGASYTPYGIIMRSVRPDETSQTNVL 244
>UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=22; Eukaryota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1203
Score = 117 bits (282), Expect = 4e-25
Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 25/232 (10%)
Frame = +2
Query: 221 PPK--IANPYLQSLGAPHIDSFNYMLD--DG--LKFAIADL----------LPSEFELPS 352
PPK A P LQ PHI SFN + + DG L + D+ L SE E+ +
Sbjct: 28 PPKDKSAFPLLQEAVQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISN 87
Query: 353 ----GEKVKVTIDEAAFAKPNVPMDTVGVKSQV---VLPTECRQRAATYKGELKIRVTLC 511
G K+ V++++ + AKP M GV S V V P+E RQR +Y+G+L +++
Sbjct: 88 SGYLGNKLSVSVEQVSIAKP---MSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWS 144
Query: 512 ID-GRSVTIE-RSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPR 685
++ G E R G LP+M+ S CH +SP EL++ E +DE GGYF++ G E+L R
Sbjct: 145 VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIR 204
Query: 686 MLLVTRRXYPVAIKRVRMERCPAXSSHTXXY*YVASPPDQTSXNNVLXSPNE 841
ML+V RR +P+AI R A SH + PDQTS NVL N+
Sbjct: 205 MLIVQRRNHPMAIIRPSFANRGASYSHYGIQ-IRSVRPDQTSQTNVLHYLND 255
>UniRef50_Q0UYS6 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1101
Score = 116 bits (279), Expect = 8e-25
Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 21/242 (8%)
Frame = +2
Query: 164 KKLAQNP-SLAYTS---HPDYRKPPK--IANPYLQSLGAPHIDSFNYMLDDG--LKFAIA 319
KK Q P + A+ + H + PPK A P L + PHI+SFN + G L+ A+
Sbjct: 7 KKAQQKPWTTAFDTKRRHDLFSNPPKDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALK 66
Query: 320 DLLPSEF----------ELPSGEKVKVTIDEAAFAKPNVP-MDTVGVKSQVVLPTECRQR 466
D+ F E+ ++ V I + K +P + V +K++ +LP ECR+R
Sbjct: 67 DIGTKVFLDGNPYARPEEVGQRNRLSVRIQDVFLDKSVLPPSNKVALKNRNILPAECRER 126
Query: 467 AATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIXSKMCHXADLSPEELIEKNEHADEW 643
ATY+G+L+ R+ ++ E LG +PIM+ S CH ++SP++L++ E ++E
Sbjct: 127 HATYRGKLRARLEWKVNNGDWREEVCDLGAVPIMLRSNRCHLENMSPDQLVKAKEESEEL 186
Query: 644 GGYFVIXGXERLPRMLLVTRRXYPVAIKR-VRMERCPAXSSHTXXY*YVASPPDQTSXNN 820
GGYF++ G E++ RML V RR +P+AIKR R P + + + PDQTS N
Sbjct: 187 GGYFIVNGIEKIIRMLQVNRRNFPMAIKRGAFTNRGPGYTQYGIL--LRSMRPDQTSQTN 244
Query: 821 VL 826
L
Sbjct: 245 AL 246
>UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6;
Ascomycota|Rep: DNA-directed RNA polymerase -
Ajellomyces capsulatus NAm1
Length = 1214
Score = 114 bits (275), Expect = 3e-24
Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 26/231 (11%)
Frame = +2
Query: 212 YRKPPK--IANPYLQSLGAPHIDSFNYMLDDG--LKFAIADLLPSEF------------- 340
+R PPK A P L + PHIDSFN + D+ L+ A+ D+ F
Sbjct: 22 FRHPPKDHTAYPSLAASIRPHIDSFNALFDNNKILEAALKDIGTKSFLDGDAETQEQKRV 81
Query: 341 ------ELPSGEKVKVTIDEAAFAKPNVPMDT-VGVKSQVVLPTECRQRAATYKGELKIR 499
P K+ V I E K +P +++ + P+ECR+R ATY+G L+ R
Sbjct: 82 RLDDGRRSPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRLRAR 141
Query: 500 VTLCID-GRSVTIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXER 676
+ ++ G R LG +PIM+ S CH SPE+L+++ E ++E GGYF++ G E+
Sbjct: 142 LEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKCSPEQLVQRKEESEELGGYFIVNGNEK 201
Query: 677 LPRMLLVTRRXYPVAIKRVRMERCPAXSSHTXXY*YVAS-PPDQTSXNNVL 826
L RML+V RR +P+AI +R ++T + S DQTS NVL
Sbjct: 202 LIRMLIVGRRNFPMAI--IRSSFTKRGQTYTKYGIQIRSVRADQTSQTNVL 250
>UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3;
Chromadorea|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1127
Score = 112 bits (270), Expect = 1e-23
Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPSE-FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV- 439
H+DSF++++ G +FA A +P+E F L +G+ V + A KP + +
Sbjct: 9 HVDSFDFLVSKGCQFA-AQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLP 67
Query: 440 VLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIXSKMCHXADLSPEELI 616
+LP ECRQR TY G LK+ + + ++G R IE LG +PIM+ S+ CH +S +EL+
Sbjct: 68 LLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELV 127
Query: 617 EKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
E E GGYF++ G E++ R+L+ RR +P+AI R
Sbjct: 128 VAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIR 165
>UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1165
Score = 109 bits (262), Expect = 1e-22
Identities = 66/213 (30%), Positives = 111/213 (52%), Gaps = 11/213 (5%)
Frame = +2
Query: 221 PPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF---------ELPSGEKVKVT 373
P + P L+ APHI SFN + + G+ ++ +L E + G ++ +
Sbjct: 22 PDEQKYPLLRDAVAPHIGSFNALTEGGMD-SLLNLAAKEVGERVVFDGDDENLGNRLAIR 80
Query: 374 IDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIE-RSLG 550
+ +P V + ++ V P+ECR+R ATY+ + + + ++G E R +G
Sbjct: 81 VANVQLGRPTVSANDKTTINRKVFPSECRERMATYRARMVLTLGYSVNGGPEKFESRDVG 140
Query: 551 YLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
+PIM+ S CH + P++++ E ++E GGYFVI G E+L R+L+V RR +P+AI
Sbjct: 141 MIPIMMGSNRCHLEGMGPKDMVAHKEESEEQGGYFVINGLEKLIRLLIVQRRNHPLAI-- 198
Query: 731 VRMERCPAXSSHTXXY*YVAS-PPDQTSXNNVL 826
+R S++T + S PDQ+S NVL
Sbjct: 199 IRKSFTKRGSNYTTFGVQIRSVRPDQSSQTNVL 231
>UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2;
Paramecium tetraurelia|Rep: DNA-directed RNA polymerase
- Paramecium tetraurelia
Length = 1115
Score = 104 bits (250), Expect = 3e-21
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 5/160 (3%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAF----AKPNVPMDTVGVKS 433
HI+SFNY+ GL L P E +P +++ + +P +
Sbjct: 16 HIESFNYLYTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPTQQGMLGD 75
Query: 434 QVVLPTECRQRAATYKGELKIRVTLCIDGR-SVTIERSLGYLPIMIXSKMCHXADLSPEE 610
VLPT+CRQ +Y + + ID T+ SLG +PI++ S+ CH LS EE
Sbjct: 76 NRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLSLGEIPILVKSQKCHLNGLSAEE 135
Query: 611 LIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
L+++ E +E+GGYF+I G E++ RML++ +R YP+A KR
Sbjct: 136 LVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKR 175
>UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1130
Score = 95.1 bits (226), Expect = 2e-18
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 18/217 (8%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 424
L+SL PHIDSF++ D G+ + D P FE S + K+ + ++P +
Sbjct: 5 LKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQ-YKIRFTDLKLSRPTRNIVEKE 63
Query: 425 VKSQVVLPTECRQRAATYKGELKIRVTL--------CIDGRSV---------TIERSLGY 553
+K + P E R+ TY K + L DG V T E LG
Sbjct: 64 IK---LYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGR 120
Query: 554 LPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAI-KR 730
LPIM+ S+ CH +SPE+LIE E E GGYF++ G E++ RML++T+ +PVA+ ++
Sbjct: 121 LPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRK 180
Query: 731 VRMERCPAXSSHTXXY*YVASPPDQTSXNNVLXSPNE 841
R P + + V PD++S N L N+
Sbjct: 181 AWTNRGPGYTKNGITIRCVR--PDRSSITNNLHYIND 215
>UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit
RPA2; n=2; Intramacronucleata|Rep: DNA-directed RNA
polymerase I subunit RPA2 - Euplotes octocarinatus
Length = 1166
Score = 90.2 bits (214), Expect = 6e-17
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Frame = +2
Query: 248 QSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKV----KVTIDEAAFAKPNVPMD 415
+++ HIDSF++ + L A +LP ++ +P K+T+ +F +
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 416 TVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV-TIERSLGYLPIMIXSKMCHXA 592
+ S ++ P+ECRQR TY L + D V + LG +P M K C+
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLK 136
Query: 593 DLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKRVR-MER 745
L+ +EL ++ E E+GGYF++ G E++ RML+V +R +P+A KR + +ER
Sbjct: 137 GLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLER 188
>UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1283
Score = 89.4 bits (212), Expect = 1e-16
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +2
Query: 362 VKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS--VTI 535
V+V++ P P + P + TY+ L ++ L I G S +T
Sbjct: 71 VQVSVLSLRIGNPTRPGSECLGSDNRMFPRHAKIAHTTYESSLIVKFGLKIPGTSKVLTK 130
Query: 536 ERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYP 715
E ++GY+PIM+ SK C+ +SPEE++E+ E DE GGYFV+ G ER+ R L+V R YP
Sbjct: 131 ELTVGYIPIMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYP 190
Query: 716 VAIK 727
+AIK
Sbjct: 191 LAIK 194
>UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus lucimarinus CCE9901
Length = 1145
Score = 87.0 bits (206), Expect = 6e-16
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSG-EKVKVTIDEAAFAKPNVPMDTV 421
++ L A H+DSFN++ + G + + P +F+ +G ++ + +++
Sbjct: 36 IKKLFACHVDSFNHLTNLGFDQILRCVKPEKFQQSAGCPELMLWLEDLKLESLKFRHRIS 95
Query: 422 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIXSKMCHXADL 598
G P CR+ +YK L ++ IDG +V +LG P+M+ S +C A L
Sbjct: 96 GRTESQKTPRGCREGGESYKAPLSVQFCWQIDGENVQRRVVNLGDCPVMVKSDVCSLALL 155
Query: 599 SPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAI-KRVRMERCPAXS 760
SP +L+ + E A E GGYF+I G ER+ RM++ RR + + + +R +R P S
Sbjct: 156 SPAQLVARGEEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFS 210
>UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 913
Score = 87.0 bits (206), Expect = 6e-16
Identities = 39/113 (34%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Frame = +2
Query: 395 KPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIX 571
+P++ ++ + L +CR++ +TY +L++ + ID ++ + + +P+M+
Sbjct: 39 RPHIESFNFMLEEGLPLAAQCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVIAAIPLMVK 98
Query: 572 SKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
S C A+LSP+EL+ KNE + E GGYF++ G E++ RML++ RR YP+AI R
Sbjct: 99 SNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIR 151
Score = 35.9 bits (79), Expect = 1.4
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 182 PSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFA 313
PSL + +Y + +Q L PHI+SFN+ML++GL A
Sbjct: 13 PSLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA 56
>UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1062
Score = 85.8 bits (203), Expect = 1e-15
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVP-MDTV 421
L+ HI+++N + + + + +L+ L G K K+ ++E A P + D +
Sbjct: 15 LKDAAKAHIEAYNAIFNGNI---LDNLVAGVPPLVKG-KTKIIVEEIHVAPPFLSDKDHI 70
Query: 422 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS-VTIERSLGYLPIMIXSKMCHXADL 598
V ++ LP ECR+R TYKG++ +RV+L D + VT ++S G+ PIM+ S +CH +
Sbjct: 71 SVDRRL-LPRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLNGI 129
Query: 599 SPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIK 727
+ E E DE GGYF+I G +R R ++ +R + A K
Sbjct: 130 KNKN--EVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFK 170
>UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1106
Score = 78.6 bits (185), Expect = 2e-13
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 3/173 (1%)
Frame = +2
Query: 221 PPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEF-ELPSGEKVKVTIDEAAFAK 397
P K +N L+ L H +SFNY L+ G + + + + + S E ++++ + K
Sbjct: 4 PNKPSNE-LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEK 62
Query: 398 PNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIXSK 577
P + P CR A TY G +K+ +T+ + + TIE G +PIM+ S
Sbjct: 63 PTY-------NGLPLFPYMCRSAALTYSGRIKLTITIKENDSNKTIEVDGGEIPIMVGSS 115
Query: 578 MCHXAD--LSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
C +PEE I E E GGYF+I G ER RM++ + +P+A+ R
Sbjct: 116 KCWIGSEYTTPEERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTR 168
>UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Theileria parva
Length = 1235
Score = 78.2 bits (184), Expect = 3e-13
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Frame = +2
Query: 362 VKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL-CIDGRSV-TI 535
VKV+I P P SQ + P + TY+ L + + + S+ T
Sbjct: 59 VKVSIISLKIGYPTRPGSECIGTSQKMYPRHAKISHTTYEAPLVVTFGIKFFESESIITK 118
Query: 536 ERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYP 715
E +G++PIM+ S C+ LS EE+I++ E ADE GGYF+I G E++ R L+V R YP
Sbjct: 119 EVPVGHIPIMVRSNRCNLKGLSGEEMIKQGEDADEPGGYFIIKGNEKMLRQLIVPRSNYP 178
Query: 716 VAIK 727
+A K
Sbjct: 179 IAFK 182
>UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1104
Score = 77.8 bits (183), Expect = 4e-13
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 3/175 (1%)
Frame = +2
Query: 215 RKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEK--VKVTIDEAA 388
++PP+ L +PH++SFN+ ++ GL+ I + +P +F G+ + + E
Sbjct: 4 QRPPEEQYKDLCHFLSPHLESFNWAVNTGLQ-KIPEWIPEQFVKRDGDDRILHFHVKELT 62
Query: 389 FAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIM 565
KP D G K + P CR TY G L I + I D +P+M
Sbjct: 63 LTKP---YDARGNK---IYPYMCRLGGQTYGGSLNIILEAAINDLPPKKFSVVANNIPVM 116
Query: 566 IXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
+ S +CH L+P+E E E GGYF+ G E+L R+L++ R+ Y A+ R
Sbjct: 117 VNSDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNR 171
>UniRef50_Q74NB5 Cluster: NEQ173; n=1; Nanoarchaeum equitans|Rep:
NEQ173 - Nanoarchaeum equitans
Length = 493
Score = 77.4 bits (182), Expect = 5e-13
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Frame = +2
Query: 263 PHIDSFNYMLDDGLKFAIADLLPSEFEL-PSGEKVKVTID-EAAFAKPNVPMDTVGVKSQ 436
P +DSFN+++D GLK I ++ EFE+ P G K + + K + +D G +
Sbjct: 23 PQLDSFNWLIDHGLKRIIQEVGKVEFEVTPEGVKEAYLVAVDIEVGKAQI-IDIQGPR-- 79
Query: 437 VVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER--SLGYLPIMIXSKMCHXADLSPEE 610
++ P E R R TY +++R DG + +R +G LP+M+ SK+C+ LS EE
Sbjct: 80 IIYPYEARLRQLTYSAPVRVRFQYYEDGE-LKEDRWVKIGELPVMVRSKICNTYGLSEEE 138
Query: 611 LIEKNEHADEWGGYFVIXGXERL 679
L++ E + GGYF+I G +R+
Sbjct: 139 LLKVYEDPLDPGGYFIINGVDRV 161
>UniRef50_Q8TXI6 Cluster: DNA-directed RNA polymerase second-largest
subunit, the N-terminal part; n=1; Methanopyrus
kandleri|Rep: DNA-directed RNA polymerase second-largest
subunit, the N-terminal part - Methanopyrus kandleri
Length = 525
Score = 76.6 bits (180), Expect = 8e-13
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Frame = +2
Query: 260 APHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV 439
A H S+++++D+GL+ I + P E E+ G ++ + +P+ ++ G + ++
Sbjct: 31 AHHFLSYHWLIDEGLQQLIEQMEPIEPEV-EGASYRIEFERIEVGEPS-SIEPDGARRKI 88
Query: 440 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS-LGYLPIMIXSKMCHXADLSPEELI 616
P E R R Y L + + DG V + +G LP+M+ SK+C+ LS EELI
Sbjct: 89 Y-PMEARLRNMLYSAPLYAEIVMYEDGEEVERDNVYVGELPVMVRSKVCNTYGLSEEELI 147
Query: 617 EKNEHADEWGGYFVIXGXERL 679
E E + GGYF+I G ER+
Sbjct: 148 EVGEDPKDPGGYFIINGSERV 168
>UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1109
Score = 74.5 bits (175), Expect = 3e-12
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIAD-LLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 421
LQSL H++S+N ++ G F + F+ + K +ID F N P+
Sbjct: 9 LQSLLKIHLNSYNQIISQGFYFLRQKYFITKNFKEYNSFKGLTSID---FYLSN-PIYQF 64
Query: 422 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIXSKMCHXADLS 601
G +LP + ++ TY+GE I + + + ++ + G PIMI S C+ L
Sbjct: 65 GTLIHKILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKEGDFPIMIKSLKCNLFGLK 124
Query: 602 PEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXY 712
P +L E +E E GGYF+ G E+L R+++V RR Y
Sbjct: 125 PHQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNY 161
>UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium hominis
Length = 1281
Score = 72.1 bits (169), Expect = 2e-11
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Frame = +2
Query: 263 PHIDSFNYMLDDGLKFAIADL---------LPSEFELPSG----EKVKVTIDEAAFAKPN 403
PHI+SFN L GLK + +L + + EL + E +++ + A KP
Sbjct: 15 PHIESFNTFLSVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVTSAKIGKPI 74
Query: 404 VPM-DTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL--GYLPIMIXS 574
++ G K + P R +Y L + + S+ G +PIM+ S
Sbjct: 75 FGYSESSGTK---LTPQHARNGHISYSAPLWLEFEGYNSSLDTVSKHSIYAGTIPIMVKS 131
Query: 575 KMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKRVR 736
CH L +EL+EK E +E GGYF+I G ER+ R ++ R YP+ +KR R
Sbjct: 132 SNCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPR 185
>UniRef50_Q58444 Cluster: DNA-directed RNA polymerase subunit B'';
n=1; Methanocaldococcus jannaschii|Rep: DNA-directed RNA
polymerase subunit B'' - Methanococcus jannaschii
Length = 498
Score = 64.9 bits (151), Expect = 3e-09
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Frame = +2
Query: 269 IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLP 448
I+S+N +++ L+ I ++ E E+ G KVK + + KP + ++ + P
Sbjct: 22 IESYNDFVENRLQKIIDEVGYIETEITGGYKVK--LGKIKVGKPVIKEADGSIRP--ITP 77
Query: 449 TECRQRAATYKGELKIRVTLCI----DGRS-VTIERSLGYLPIMIXSKMCHXADLSPEEL 613
E R R TY L + +T I D R T+E +G LP+M+ SK+CH S EEL
Sbjct: 78 MEARIRDLTYSVPLYLEMTPIIGEGEDAREGETVEVYIGELPVMLGSKICHLYGKSREEL 137
Query: 614 IEKNEHADEWGGYFVIXGXERL 679
I+ E ++ GYF+I G E++
Sbjct: 138 IDLGEDPEDPFGYFIINGTEKV 159
>UniRef50_A0RXX0 Cluster: DNA-directed RNA polymerase, beta
subunit/140 kD subunit; n=2; Thermoprotei|Rep:
DNA-directed RNA polymerase, beta subunit/140 kD subunit
- Cenarchaeum symbiosum
Length = 1115
Score = 64.5 bits (150), Expect = 4e-09
Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Frame = +2
Query: 200 SHPDYRKPPKIANPYL-QSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGE-KVKVT 373
+HP ++ P I + + + H++SF+ L+ GL+ I + + E+ + E K+
Sbjct: 2 AHPANKRWPVIQDILRREGIARQHLNSFDEFLERGLQSIIDE--QGQIEIENAEYPYKIQ 59
Query: 374 IDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLG 550
+ + KP + M+ G + + P E R R +Y + + ++ DG+++ + +G
Sbjct: 60 LGKVKLQKPRM-MELDGSITYIT-PAEGRLRNVSYSAPVMMEASVVEDGKTLESKFVHIG 117
Query: 551 YLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+P MI S C +L ++LIE+ E ++ GGYF+I G ER+
Sbjct: 118 DIPTMIKSSACVLHNLPDQKLIEQGEDPNDPGGYFIINGSERV 160
>UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79;
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1233
Score = 63.3 bits (147), Expect = 8e-09
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +2
Query: 428 KSQVVLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIMIXSKMCHXADLSP 604
+ + +LP ECRQ +Y G V DG V + G PIM+ SK+C
Sbjct: 113 RKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADC 172
Query: 605 EELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
+L++ E E GGYF++ G ER+ R ++ +R +P ++ R
Sbjct: 173 RKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIR 214
>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum (isolate 3D7)
Length = 1450
Score = 62.9 bits (146), Expect = 1e-08
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 343
KK+ +N T + ++ P ++ L HI+S+NY + +K + +
Sbjct: 227 KKIYENSKCVNTLNEKWKLLPAYLK--VKGLVKQHIESYNYFIKREIKTIMNATTNKIIK 284
Query: 344 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 523
E V + P+V + + K + P CRQR TY + + V + G
Sbjct: 285 SDIDEHFYVEFLDITVGTPSVEENMIETK---LTPQICRQRDLTYSAPIYVDVEY-VKGN 340
Query: 524 SVTIERS--LGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
S+ + + +G LP+M+ S +C + S EEL++ E + GGYF++ G ER+
Sbjct: 341 SIITKNNVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERV 394
>UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6;
Plasmodium (Vinckeia)|Rep: DNA-directed RNA polymerase -
Plasmodium yoelii yoelii
Length = 1470
Score = 61.3 bits (142), Expect = 3e-08
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Frame = +2
Query: 236 NPYLQSLGAPHIDSFNYMLDDGLK-----FAIADLLPS-------EFELPSGEKVKVTID 379
N + + L HID FN ++ +K + + P+ +E E++K I
Sbjct: 83 NIFTKFLVQSHIDDFNSFINVYIKNMPETLPVIEFSPNLNKYSCLNYEKKPKERIKFYIS 142
Query: 380 EAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLP 559
+ P + D + P C+ +TY+GE+ + + V S G++P
Sbjct: 143 DIIIKTPVIKNDNGNTRPNY--PYLCKLACSTYEGEVLVVINKQYKNEIVRTTVSTGFIP 200
Query: 560 IMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLL 694
IM+ S +C+ +L+ +EL++K E GG+F++ G ++ R ++
Sbjct: 201 IMVLSDLCNLKNLNKKELVQKGEDESILGGFFIVSGHLKIIRYVI 245
>UniRef50_P15352 Cluster: DNA-directed RNA polymerase subunit B'';
n=16; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 523
Score = 60.1 bits (139), Expect = 8e-08
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Frame = +2
Query: 248 QSLGAPHIDSFNYMLDDGLKFAIADLLPSEFEL---PSGEKVKVTIDEAAFAKPNVPMDT 418
+ L H S+N L+ G++ + + E ++ E V V + + P V +
Sbjct: 17 ERLAEHHFRSYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELGDVRAVTPRV-REA 75
Query: 419 VGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSV------TIERSLGYLPIMIXSKM 580
G +++ P E R R TY + + +++ G T E +G +PIM+ S
Sbjct: 76 DG-SEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVLDTTETKVGRMPIMVGSDK 134
Query: 581 CHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
C+ + S EELIE E + GGYF+I G ER+
Sbjct: 135 CNISGFSDEELIEIGEDPADPGGYFIINGSERV 167
>UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellular
organisms|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 1562
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/119 (24%), Positives = 60/119 (50%)
Frame = +2
Query: 338 FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCID 517
F S + +K + + P + D ++ P C+ A TY+GE+ +++ +
Sbjct: 137 FNRKSTDSIKFYVSDIKIKNPVLKNDKGETRNDY--PYLCKLSARTYEGEITLKINKKTN 194
Query: 518 GRSVTIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLL 694
++ S GY+P+M+ S +C+ + L+ + L +K E GG+FV+ G ++ R ++
Sbjct: 195 DEIISTTVSAGYIPVMVLSNLCNLSSLNKKMLPQKGEDESLLGGFFVVSGHLKVIRYVI 253
>UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1238
Score = 57.6 bits (133), Expect = 4e-07
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Frame = +2
Query: 227 KIANPYL--QSLGAPHIDSFNYMLDDGLKFAIAD---LLPSEFELPSGEKVKVTIDEAAF 391
++ + YL +S+ H+DSFN++LD + I + L+ ++ KV + + +
Sbjct: 23 RLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENSLLVVAKHPQFHLRIEKVDVKQVSQ 82
Query: 392 AKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTI---ERSLGYLPI 562
+ + G + P ECRQR TY + I V +S E +GY+PI
Sbjct: 83 GSSKLSSSSAG-SGVGLTPHECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPI 141
Query: 563 MIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXER 676
M+ S C + S ++ E D+ GGYF++ G E+
Sbjct: 142 MLRSNRCILTNKSRKQQAFLQECPDDPGGYFIVRGAEK 179
>UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide,
putative; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase polypeptide, putative - Leishmania major
Length = 1132
Score = 57.6 bits (133), Expect = 4e-07
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 445
HI SF+++++ L+ + + E + + +P + G ++V
Sbjct: 36 HIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRICRPQEIVGK-GHIPKLVT 94
Query: 446 PTECRQRAATYKGELKIRVTLCIDGRS--VTIERS--LGYLPIMIXSKMCHXADLSPEEL 613
P ECR R TY+G++ + V RS + +E+ +G +PIM+ SK C+ + EEL
Sbjct: 95 PQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIPIMLKSKCCNLYRKTREEL 154
Query: 614 IEKNEHADEWGGYFVIXGXERL 679
+ E + GGYF+I G E++
Sbjct: 155 VNMRECPLDPGGYFIIKGVEKV 176
>UniRef50_Q91F97 Cluster: 428L; n=1; Invertebrate iridescent virus
6|Rep: 428L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 1193
Score = 57.2 bits (132), Expect = 5e-07
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Frame = +2
Query: 356 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCI--DGRSV 529
EK+ + + AKP + D V+ + P E RQ+ TY + + V + D +
Sbjct: 91 EKIMLKFENVFVAKPTITNDDTTVRP--LYPAEARQKMITYDSFVFVDVLEYVLRDEEEI 148
Query: 530 TIERSL----GYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+ + L +PIM+ S C+ + +P+E IE E ++ GGYF+I G ER+
Sbjct: 149 LVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERV 202
>UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1114
Score = 57.2 bits (132), Expect = 5e-07
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 452 ECRQRAATYKGELKIRVTLCI-DGRSVTIERSLGYLPIMIXSKMCHXADLSPEELIEKNE 628
+CRQ +Y G V DG V + G PIM+ SK+C +L++ E
Sbjct: 39 DCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKE 98
Query: 629 HADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
E GGYF++ G ER+ R ++ +R +P ++ R
Sbjct: 99 STSEMGGYFILNGIERVFRCVIAPKRNHPTSMIR 132
>UniRef50_P41558 Cluster: DNA-directed RNA polymerase subunit B'';
n=10; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B'' - Methanococcus vannielii
Length = 499
Score = 56.4 bits (130), Expect = 9e-07
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Frame = +2
Query: 251 SLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVK 430
SL HIDS++ +++ ++ I ++ E E+ G KV+ + KP + + G
Sbjct: 15 SLVKHHIDSYDDFVENKIQGIIDEVTGVETEIKGG--YKVSFGKVRVTKP-INKEADGSV 71
Query: 431 SQVVLPTECRQRAATYKGELKIRVTLCI----DGRSVT-IERSLGYLPIMIXSKMCHXAD 595
++ P E R R Y L + + I + ++++ IE +G LP+M+ +K+CH +
Sbjct: 72 KEIT-PMEARIRNLAYSAPLYLEMIPLIGEGDEEKTLSPIEVYIGELPVMLGAKICHLSG 130
Query: 596 LSPEELIEKNEHADEWGGYFVIXGXER 676
S E++I E + GYF++ G E+
Sbjct: 131 KSEEDMINYGEDPKDPLGYFIVNGSEK 157
>UniRef50_P11513 Cluster: DNA-directed RNA polymerase subunit B;
n=68; Archaea|Rep: DNA-directed RNA polymerase subunit B
- Sulfolobus acidocaldarius
Length = 1126
Score = 56.0 bits (129), Expect = 1e-06
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Frame = +2
Query: 230 IANPYLQSLGA--PHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPN 403
IA + ++ G H+DSFN L + L+ I + E+P +K+ + + + KP+
Sbjct: 10 IAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPG---LKIKLGKIRYEKPS 66
Query: 404 VPMDTVGVKSQVVLPTECRQRAATYKGEL---KIRVTLCIDGRSVTIERSLGYLPIMIXS 574
+ G ++ P E R R TY + I V I+G + I +G LPIM+ S
Sbjct: 67 IRETDKGPMREIT-PMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIY--IGDLPIMLKS 123
Query: 575 KMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
++L ++LIE E + GGYF++ G E++
Sbjct: 124 VADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKV 158
>UniRef50_UPI0000E487B4 Cluster: PREDICTED: similar to Polymerase
(RNA) III (DNA directed) polypeptide B; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Polymerase (RNA) III (DNA directed) polypeptide B -
Strongylocentrotus purpuratus
Length = 830
Score = 54.8 bits (126), Expect = 3e-06
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 424
++ L HIDSFNY ++ ++ + P + P+ + P+V ++
Sbjct: 52 VRGLVRQHIDSFNYFIN--VEVFSMNFAPLQSTFPAEALPYLQYLNIYVGSPDVE-ESFN 108
Query: 425 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSL--GYLPIMIXSKMCHXADL 598
+ ++ P ECR R TY + + + G+ I +L G +PIM+ S C
Sbjct: 109 I-TKPTSPHECRLRDMTYSAPITVDIEYT-RGQQRVIRNNLPIGRMPIMLRSSNCVLTGK 166
Query: 599 SPEELIEKNEHADEWGGYFVIXGXERL 679
SP EL + NE + GGYF++ G E++
Sbjct: 167 SPAELAKLNECPLDPGGYFIVRGTEKV 193
>UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1134
Score = 54.4 bits (125), Expect = 4e-06
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +2
Query: 572 SKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
SK+CH E+LI E A E GGYF+ G ERL R+L++ +R YP+ + R
Sbjct: 90 SKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIR 142
Score = 36.7 bits (81), Expect = 0.82
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELP 349
L+ L PHIDSF+Y +D+GL + + P E +P
Sbjct: 18 LRELYRPHIDSFDYFIDEGLDKMLQSIRPVEITVP 52
>UniRef50_Q7SXI3 Cluster: Zgc:66298 protein; n=1; Danio rerio|Rep:
Zgc:66298 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 150
Score = 52.4 bits (120), Expect = 2e-05
Identities = 32/104 (30%), Positives = 51/104 (49%)
Frame = +2
Query: 170 LAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELP 349
L PSL + + + P + + +Q L HI+SF+ + DGL + + P EF L
Sbjct: 9 LKTEPSLKHLTEAGFGVPKEKQSVPVQELVKAHIESFDQAVTDGLCRVVEAIPPMEF-LY 67
Query: 350 SGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 481
G+++ ++ EA P+V + + V P ECR R TYK
Sbjct: 68 KGDRISLSFVEAIIHTPSVSKGGIS-RDLRVFPAECRGRRCTYK 110
>UniRef50_Q197F1 Cluster: Putative uncharacterized protein; n=1;
Aedes taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus
iridescent virus
Length = 1140
Score = 52.4 bits (120), Expect = 2e-05
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Frame = +2
Query: 227 KIANPYLQSLG-APH-IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP 400
KI Y ++ G H I++FN+ + GLK I + S + S + + P
Sbjct: 21 KIVADYFKTNGLVKHQIETFNHFISKGLKTIINN--ESSIKYQSHDNYSLKFTNIYVEYP 78
Query: 401 NVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCID---GRSVTIERS----LGYLP 559
++ D ++ + P E R + +Y G + + V ++ G+ I + +P
Sbjct: 79 SIIDDDRTIRD--LYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIP 136
Query: 560 IMIXSKMCHXADLSPEELIEKNEHAD-EWGGYFVIXGXERL 679
IM+ S +CH + +P E + N H+ + GGYF+I G ER+
Sbjct: 137 IMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERV 177
>UniRef50_Q5CPZ8 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1287
Score = 52.4 bits (120), Expect = 2e-05
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 445
HIDS+NY + ++ + + +A P + + + V +
Sbjct: 127 HIDSYNYFVTTEIQSIVRANANRMIRSDVDPSFFIEFLDARVGMPKLEENMITVD---LT 183
Query: 446 PTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIXSKMCHXADLSPEELIE 619
P CR R TY + + V + G +V +++ +G +P+M+ SK+C + E+++
Sbjct: 184 PMMCRMRDITYAAPIFVDVDY-VRGNTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVK 242
Query: 620 KNEHADEWGGYFVIXGXER 676
NE + GGYFV+ G E+
Sbjct: 243 LNECPHDPGGYFVVKGTEK 261
>UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1142
Score = 52.4 bits (120), Expect = 2e-05
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +2
Query: 269 IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLP 448
++SFN ++ GL ++ + E+ E +V I N+ +D +++Q++ P
Sbjct: 48 LNSFNDFIESGL----TKIMNANKEVIFSENPRVYI-----RYKNIYVDRPKIRNQILTP 98
Query: 449 TECRQRAATYKGELKIRVTLCIDGRSVTI--ERSLGYLPIMIXSKMCHXADLSPEELIEK 622
CR TY G + + ++G +V + + LPIM+ S C+ + S E +
Sbjct: 99 QMCRLSDETYSGNVLVDYDF-VNGSTVKSFNNQCIAKLPIMLQSNRCYLYNASDETFAKY 157
Query: 623 NEHADEWGGYFVIXGXERL 679
+E + GGYFVI G ER+
Sbjct: 158 DECRYDPGGYFVINGTERV 176
>UniRef50_Q7QXS5 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1235
Score = 52.0 bits (119), Expect = 2e-05
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPS-EFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVV 442
H++SFN +D L I P+ L + + +KV I P+
Sbjct: 57 HVNSFNDFIDS-LNTTIIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFT----------- 104
Query: 443 LPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIXSKMCHXADLSPEELIEK 622
P R+ A Y G L + + + S T+ + G +P+M+ SK+C + EE I
Sbjct: 105 -PAFARETRANYCGPLHVTLKVSDGPMSKTVVINAGDVPVMVGSKLCLLHGKTREERIRL 163
Query: 623 NEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKRVR 736
E + GGYF+ G +++ R+ L P+A + R
Sbjct: 164 REDERDAGGYFISNGQDKVVRLYLDCLSNTPLAFTKYR 201
>UniRef50_Q236N3 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=2; Oligohymenophorea|Rep: DNA-directed
RNA polymerase, beta subunit family protein -
Tetrahymena thermophila SB210
Length = 1141
Score = 50.0 bits (114), Expect = 8e-05
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Frame = +2
Query: 197 TSHPDYRKPPKIANPYLQSLG--APHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKV 370
T+ P R+ +I + YL G + HI SFNY ++ L+ I + E L + +
Sbjct: 5 TAEP-LREKTRIIDSYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNSFLL 63
Query: 371 TIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER--S 544
+ P T ++LP E R ++Y G + + L +G+ R +
Sbjct: 64 EYTKIYIEPPAHDNKT------MMLPQEARLSNSSYAGNIYVDCELTFNGKKEDSLRKVN 117
Query: 545 LGYLPIMIXSKMCHXAD-LSPEELIEKNEHADEWGGYFVIXGXERL 679
+G +PIM+ S C+ L ++ + E A++ GYF+I G E++
Sbjct: 118 IGKMPIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKV 163
>UniRef50_Q9NW08 Cluster: DNA-directed RNA polymerase III subunit
RPC2; n=84; Eukaryota|Rep: DNA-directed RNA polymerase
III subunit RPC2 - Homo sapiens (Human)
Length = 1133
Score = 49.2 bits (112), Expect = 1e-04
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 421
++ L HIDSFNY ++ +K + + EKV D + K N+ +
Sbjct: 36 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKVTSDADPMWYLKYLNIYVGLP 85
Query: 422 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIXSKMC 583
V+ ++ V P ECR R TY + + + R + +G +PIM+ S C
Sbjct: 86 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 145
Query: 584 HXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+P E + NE + GGYF++ G E++
Sbjct: 146 VLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 177
>UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1;
Phaeosphaeria nodorum|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1137
Score = 48.8 bits (111), Expect = 2e-04
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIAD--LLPSEFELPSGEKVKVTIDEAAFAKPN-VPMDTVGVKSQ 436
H+DS+N+ +D LK I + S+F+ K + + PN D +
Sbjct: 125 HVDSYNHFVDVELKKIIKANRFVRSDFD----PKFLLEYTDIRVLSPNRQEEDDLDNHRS 180
Query: 437 VVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS---LGYLPIMIXSKMCHXADLSPE 607
V P ECR R TY I V + S ++R+ +G +PIM+ S C A +
Sbjct: 181 TVTPNECRLRDMTYAAP--IVVDIVYTRGSAKVKRTGIKIGRMPIMLKSNKCVLAAKNDR 238
Query: 608 ELIEKNEHADEWGGYFVIXGXERL 679
E+ +E + GGYF+ G E++
Sbjct: 239 EMAVMDECPLDPGGYFITRGQEKV 262
>UniRef50_UPI000065EBB2 Cluster: DNA-directed RNA polymerase III
subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III subunit 2) (RPC2).; n=2;
Deuterostomia|Rep: DNA-directed RNA polymerase III
subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III subunit 2) (RPC2). - Takifugu rubripes
Length = 1206
Score = 48.4 bits (110), Expect = 3e-04
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 421
++ L HIDSFNY ++ +K + + EK+ D + K N+ +
Sbjct: 1 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKITSDADPMWYLKYLNIYVGMP 50
Query: 422 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIXSKMC 583
V+ ++ V P ECR R TY + + + R + +G +PIM+ S C
Sbjct: 51 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 110
Query: 584 HXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+P E + NE + GGYF++ G E++
Sbjct: 111 VLTGKTPMEFAKLNECPLDPGGYFIVKGQEKV 142
>UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase - Antonospora
locustae (Nosema locustae)
Length = 1014
Score = 48.4 bits (110), Expect = 3e-04
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIXSKMCHXADLSP--E 607
VLP ECR R TY G + + + R V I+++ +G +PIM+ S +CH + E
Sbjct: 6 VLPEECRLRDLTYCGNIYVDIEY-TKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDDCE 64
Query: 608 ELIEKNEHAD---EWGGYFVIXGXERL 679
+ E H + + GGYF++ G ER+
Sbjct: 65 TVRETYGHRECPLDMGGYFIVKGVERV 91
>UniRef50_Q54IZ9 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1608
Score = 48.0 bits (109), Expect = 3e-04
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 445
HIDSFN+ ++ +K + + V + P D + S +
Sbjct: 56 HIDSFNFFINVEMKKIVK--ANERLTAENDPSYFVRFTDINVGSPTSTEDNLD--SVQLT 111
Query: 446 PTECRQRAATYKGELKIRVTLCIDGRSVTI-ERSLGYLPIMIXSKMCHXADLSPEELIEK 622
P CR R TY + + + + + ++ + +G +PIM+ S C + +PE++
Sbjct: 112 PQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAAL 171
Query: 623 NEHADEWGGYFVIXGXERL 679
E + GGYF++ G E++
Sbjct: 172 GECPMDPGGYFIVRGQEKV 190
>UniRef50_Q6DRH1 Cluster: RNA polymerase II subunit B; n=10;
Eukaryota|Rep: RNA polymerase II subunit B - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 562
Score = 47.2 bits (107), Expect = 6e-04
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIXSKMCHXADLS 601
++P E R R TY L + +T I DG + +G +PIM+ S C + L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLT 167
Query: 602 PEELIEKNEHADEWGGYFVIXGXERL 679
+L E NE + GGYF+I G E++
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKV 193
>UniRef50_Q4Q6P8 Cluster: DNA-directed RNA polymerase II subunit 2,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 2, putative - Leishmania major
Length = 1185
Score = 46.8 bits (106), Expect = 8e-04
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCI-----DGRSVTIERS--LGYLPIMIXSKMCHXADL 598
+ P ECR R TY + ++ + + + D T R+ LG +PIM+ S C+ +
Sbjct: 124 LFPNECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGK 183
Query: 599 SPEELIEKNEHADEWGGYFVIXGXERL 679
+EL NE + GGYFVI G E++
Sbjct: 184 DEDELPRLNECPHDQGGYFVINGTEKV 210
>UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA
polymerase - Encephalitozoon cuniculi
Length = 1110
Score = 46.4 bits (105), Expect = 0.001
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Frame = +2
Query: 266 HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVL 445
HI+S++Y +D +K + + ++ +K + A P+V + V V
Sbjct: 23 HIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYL--DIRVAMPSVEENMVNYN---VF 77
Query: 446 PTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIXSKMCHXA--DLSPEE- 610
P ECR R TY + + + + R + ++R +G +P+M+ S CH P E
Sbjct: 78 PIECRLRDITYSANIYVDIEY-VRNRQIIVKRDVCIGKMPVMLRSSRCHLRRETKGPMEG 136
Query: 611 -------LIEKNEHADEWGGYFVIXGXERL 679
+ E E + GGYF++ G ER+
Sbjct: 137 RKTKDRRIRESQECPLDVGGYFIVRGIERV 166
>UniRef50_A5DHT2 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=652; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB2 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1236
Score = 46.4 bits (105), Expect = 0.001
Identities = 27/74 (36%), Positives = 37/74 (50%)
Frame = +2
Query: 545 LGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAI 724
LG +PIM+ SK C DL E E E + GGYFVI G E+ +L+ + I
Sbjct: 160 LGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGSEK----VLIAQERSAANI 215
Query: 725 KRVRMERCPAXSSH 766
+V + P+ SH
Sbjct: 216 VQVFKKAAPSPISH 229
>UniRef50_P08266 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=12; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB2 - Drosophila melanogaster (Fruit fly)
Length = 1176
Score = 46.4 bits (105), Expect = 0.001
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 18/192 (9%)
Frame = +2
Query: 158 NPKKLAQNPSLAYTSHPDYRKPPKIA-NPYLQSLGA--PHIDSFNYMLDDGLKFAIADL- 325
N ++L + + SH +++ I N Y G +DSF+ + ++ + D
Sbjct: 5 NEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 64
Query: 326 ---LPSEFELPSGE-----KVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYK 481
L +E + SGE + + ++ +KP + G S + +P E R R TY
Sbjct: 65 AIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT-HWEKDGSPSPM-MPNEARLRNLTYS 122
Query: 482 GELKIRVTLC-----IDGRSVTIERS-LGYLPIMIXSKMCHXADLSPEELIEKNEHADEW 643
L + +T +D +++ +G +PIM+ S C + L+ +L E NE +
Sbjct: 123 APLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDP 182
Query: 644 GGYFVIXGXERL 679
GGYF+I G E++
Sbjct: 183 GGYFIINGSEKV 194
>UniRef50_Q98RY5 Cluster: DNA-directed RNA polymerase; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase -
Guillardia theta (Cryptomonas phi)
Length = 1206
Score = 45.2 bits (102), Expect = 0.002
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +2
Query: 329 PSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTL 508
P +L S ++ + + + +KP D G+ +V P E R R TY L ++
Sbjct: 58 PGNDDLLSKIRMVIRLGQLHLSKPTYIEDD-GLVHNLV-PNEARLRNLTYSSPLYCEIST 115
Query: 509 CIDGRSVTIERSL---------GYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVI 661
I +I+ L G +PIMI SK C ++L + L E D+ GGYF++
Sbjct: 116 SIIKNEKSIDYILKQFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIV 175
Query: 662 XGXERL 679
G E++
Sbjct: 176 NGSEKV 181
>UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B;
n=12; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit B - Thermoplasma acidophilum
Length = 1195
Score = 44.0 bits (99), Expect = 0.005
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Frame = +2
Query: 395 KPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIX 571
KP + + G +Q+ P E R R Y + +++ + DG E +G LP+M+
Sbjct: 89 KPEIK-EASGASNQIT-PNEARLRDLNYLAPVTLKLRIVEDGIEKGSEIIKVGDLPVMVR 146
Query: 572 SKMCHXADLSPEELIEKN----------------EHADEWGGYFVIXGXERL 679
SK+C ++ + ++ IEKN E D+ GGYF+I G ER+
Sbjct: 147 SKICTLSEENLDQYIEKNNGPIGLSRREKLQYVGEDPDDPGGYFIIGGSERV 198
>UniRef50_P30876 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=745; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB2 - Homo sapiens (Human)
Length = 1174
Score = 44.0 bits (99), Expect = 0.005
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIXSKMCHXADLS 601
++P E R R TY L + +T + +G + +G +PIM+ S C L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLT 167
Query: 602 PEELIEKNEHADEWGGYFVIXGXERL 679
+L E NE + GGYF+I G E++
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKV 193
>UniRef50_Q06VE3 Cluster: RNA polymerase subunit; n=3;
Ascovirus|Rep: RNA polymerase subunit - Trichoplusia ni
ascovirus 2c
Length = 1160
Score = 42.3 bits (95), Expect = 0.017
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = +2
Query: 269 IDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLP 448
+DSF LD+ I +L E L G +V + + F P+ ++ + S+ + P
Sbjct: 25 LDSFTSFLDN-----IRTVLHDEPPLVIGGEV-IRFENVTFLTPSYLVNGI---SKTLYP 75
Query: 449 TECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIXSKMCHXADLSPEELIEKN 625
+ R + Y+ + + V G R +E L LP M+ S+MC+ +S EL+
Sbjct: 76 SIARMKGLNYEFTMCVDVINETTGVRDNGVE--LCQLPCMVGSEMCNLKGMSDAELLTHG 133
Query: 626 EHADEWGGYFVIXGXERL 679
E GGYF+ G ER+
Sbjct: 134 EILGIPGGYFIHNGVERV 151
>UniRef50_P08518 Cluster: DNA-directed RNA polymerase II subunit
RPB2; n=1329; Fungi|Rep: DNA-directed RNA polymerase II
subunit RPB2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1224
Score = 42.3 bits (95), Expect = 0.017
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 545 LGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAI 724
+G LPIM+ SK C+ ++ + +L + E + GGYF+I G E+ +L+ + I
Sbjct: 167 IGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEK----VLIAQERSAGNI 222
Query: 725 KRVRMERCPAXSSH 766
+V + P+ SH
Sbjct: 223 VQVFKKAAPSPISH 236
>UniRef50_UPI00004998DA Cluster: DNA-directed RNA polymerase
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1170
Score = 41.9 bits (94), Expect = 0.022
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Frame = +2
Query: 356 EKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRV--TLCIDGRS- 526
E+ + + + F P V T S + P E R R+ TY +L+++ T+ +G
Sbjct: 70 EEHTIVLTDPIFHFPKV--STGSKASASLFPHEARLRSLTYSCQLEVKAKDTIRKNGAEE 127
Query: 527 -VTIER-SLGYLPIMIXSKMCHXAD-LSPEELIEKNEHADEWGGYFVIXGXERL 679
T+ + + +P M+ S +C ++ +I K+E + E GGYF+I G E++
Sbjct: 128 ITTVPKIDIASIPSMLKSDVCRLKRCVTQPSMINKDECSFEQGGYFIIKGSEKV 181
>UniRef50_Q4A245 Cluster: Putative DNA-directed RNA polymerase II
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase II subunit - Emiliania
huxleyi virus 86
Length = 1156
Score = 41.9 bits (94), Expect = 0.022
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Frame = +2
Query: 230 IANPYLQSLG--APHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPN 403
+ Y+ S+ A I+S+++ +++ L + I++ + SG KV+ F P+
Sbjct: 12 VIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISYMHSSG---KVS-HHVHFTNPS 67
Query: 404 VPMDTVGVKS---QVVLPTECRQRAATYKGELKI-----RVTLCID-----GRSVTIERS 544
V + + + P R R TY + + R+ + R V
Sbjct: 68 VNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRKVFRNVI 127
Query: 545 LGYLPIMIXSKMCHXADLSPEEL---IEKNEHADEWGGYFVIXGXER 676
+ +P+M+ SK+C+ AD+S +L +K+E + GGYF+I G E+
Sbjct: 128 IAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEK 174
>UniRef50_A3AIW8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 231
Score = 41.9 bits (94), Expect = 0.022
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Frame = +2
Query: 230 IANPYLQSLGAP---HIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP 400
+ +P +SL AP +D F +L LK A P +P+ ++ ++ +
Sbjct: 38 LPSPTYRSLAAPVTKPVDKFA-LLPAFLKVAP----PPTCIIPASLLIRFDAIQSLYNSV 92
Query: 401 NVPMDTVGVK--SQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS----LGYLPI 562
V + +V V+ ++ + P CR TY + + + G+ ++R +GYLPI
Sbjct: 93 RVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV-GKQYELKRKPNFIIGYLPI 151
Query: 563 MIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
M+ S C EL E + GGYF++ G E++
Sbjct: 152 MLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKV 190
>UniRef50_Q1L6B6 Cluster: RNA polymerase II second largest subunit;
n=45; Magnoliophyta|Rep: RNA polymerase II second
largest subunit - Nepenthes maxima
Length = 667
Score = 40.7 bits (91), Expect = 0.050
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = +2
Query: 428 KSQVVLPTECRQRAATYKGELKIRVTLCI-----DGRSVTIERS-----LGYLPIMIXSK 577
++ + P R R TY L + VT + DG V+ + +G +PIM+ S
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSS 60
Query: 578 MCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
C S ++L E E + GGYF+I G E++
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 94
>UniRef50_Q4ZJA8 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1018
Score = 39.5 bits (88), Expect = 0.12
Identities = 23/80 (28%), Positives = 44/80 (55%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERSLGYLPIMIXSKMCHXADLSPEELIE 619
+ P E +Q+ TY + I + +G+S +E + LP+M+ SK+C +++ + E
Sbjct: 50 ITPLEAKQKDLTYA--ISINYEIDFNGKSTILE--IFSLPLMLRSKLCLTNNVAHQTTFE 105
Query: 620 KNEHADEWGGYFVIXGXERL 679
+ + GGYF++ G ER+
Sbjct: 106 LCPN--DPGGYFIVKGKERV 123
>UniRef50_O96236 Cluster: DNA-directed RNA polymerase; n=10;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum (isolate 3D7)
Length = 1364
Score = 39.1 bits (87), Expect = 0.15
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Frame = +2
Query: 413 DTVGVKSQVVLPTECRQRAATYKGELKIRV---TLCIDG---RSVTIER------SLGYL 556
D + ++ + P E R R TY + I + T ID + V E+ +LG +
Sbjct: 110 DEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGRI 169
Query: 557 PIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
P+M+ S C L E+ + E + + GGYF++ G E++
Sbjct: 170 PLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKV 210
>UniRef50_Q7QSN9 Cluster: DNA-directed RNA polymerase; n=2; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia ATCC 50803
Length = 1293
Score = 38.3 bits (85), Expect = 0.27
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Frame = +2
Query: 242 YLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTV 421
Y + L A IDS+N+ + +K +A P ++ E +F+ P + + V
Sbjct: 22 YCRGLAAMQIDSYNHFVKHTMKNIMASFPP--IQVTRTENFCCYNHILSFSDPQLEPN-V 78
Query: 422 GVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS----------VTIERSL---GYLPI 562
+K P +CR ++++Y +K++++ I S VT E L P+
Sbjct: 79 HIK-----PNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKLIDFCLFPV 133
Query: 563 MIXSKMCHX-------ADLSPEELIEKNEHADEWGGYFVIXGXER 676
M+ S +C+ +D+ +I DE GGYF+I G E+
Sbjct: 134 MVNSCLCYLNTNKVAGSDIKAHRIINDECPYDE-GGYFIIRGAEK 177
>UniRef50_Q4U9X1 Cluster: DNA-directed RNA polymerase; n=26;
Eukaryota|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1223
Score = 37.9 bits (84), Expect = 0.36
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Frame = +2
Query: 335 EFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVT--- 505
E E+ + K+ + + +KP+V + GV + P E R R TY ++ I +
Sbjct: 111 EEEVENSVVYKLKFGQLSLSKPSVE-EKDGVFKHI-WPQEARLRNLTYASQVYIDIEQET 168
Query: 506 -LCIDGRSVTIERS------LGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIX 664
+ DG+ + + L +P+M S C L+ ++L + E + GGYFV+
Sbjct: 169 YINEDGKLTQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVVN 228
Query: 665 GXERL 679
G ER+
Sbjct: 229 GGERV 233
>UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1171
Score = 37.5 bits (83), Expect = 0.47
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 9/184 (4%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 424
++ + HI+S+N + +K + PS L S K I+ M
Sbjct: 49 MRGIARQHINSYNNFVLREIKEIVN--APSNKMLKSDACKKFYIEFIDINVGEPTMSENN 106
Query: 425 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIER-SLGYLPIMIXSKMCHXA--- 592
K ++ P CR R TY + + V +G V +R +G LP+M+ S +C +
Sbjct: 107 NKPILLTPQLCRMRDITYSAPMYVDVEY-YNGEGVASKRVEIGRLPVMLRSCVCALSGGM 165
Query: 593 ----DLSPEELIEK-NEHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKRVRMERCPAX 757
++ EL + E + GGYF+I G E++ M + + V+ C
Sbjct: 166 RANGNVDNFELSSRLGECPYDPGGYFIIKGVEKVILMQEQLSKCRVIVETDVKKNICATV 225
Query: 758 SSHT 769
+S T
Sbjct: 226 TSAT 229
>UniRef50_Q5KIB7 Cluster: DNA-directed RNA polymerase; n=72;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1193
Score = 36.3 bits (80), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 542 SLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
S+G +P+M+ S C L ++ E E + GGYF+I G E++
Sbjct: 193 SIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKV 238
>UniRef50_Q9LK40 Cluster: DNA-directed RNA polymerase; n=29;
Spermatophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1172
Score = 35.9 bits (79), Expect = 1.4
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 545 LGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+G +P+M+ S +C ++ E +K + A + GGYFVI G E++
Sbjct: 173 IGSIPVMVKSILCKTSEKGKENC-KKGDCAFDQGGYFVIKGAEKV 216
>UniRef50_Q3LW27 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1159
Score = 35.1 bits (77), Expect = 2.5
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCI-DGRSVTIERS----------LGYLPIMIXSKMCH 586
+ P + R R TY +++I+V I D +++ +G P MI S C+
Sbjct: 98 ISPNKSRLRNITYSSKVRIQVFDEITDKHDANLKKKVVNKSKKFIYIGKFPCMIKSDTCY 157
Query: 587 XADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+ S L +E + GGYF+I G E++
Sbjct: 158 LNNFSEISLARNDECPFDEGGYFIINGNEKV 188
>UniRef50_Q23G41 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=4; Oligohymenophorea|Rep: DNA-directed
RNA polymerase, beta subunit family protein -
Tetrahymena thermophila SB210
Length = 1226
Score = 34.3 bits (75), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 554 LPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
LP+M+ S C A + E I+ E + GGYF+I G E++
Sbjct: 184 LPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKV 225
>UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Leishmania major
Length = 1616
Score = 33.9 bits (74), Expect = 5.8
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 626 EHADEWGGYFVIXGXERLPRMLLVTRRXYPVAIKR 730
E E GGYF++ G ER+ R LL+ R P+ I R
Sbjct: 498 EEQKEVGGYFIMNGGERILRALLMQRCNVPINIYR 532
>UniRef50_A2E7H8 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA
polymerase - Trichomonas vaginalis G3
Length = 1177
Score = 33.9 bits (74), Expect = 5.8
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 554 LPIMIXSKMCHXADLSPEELIEKNEHADEW--GGYFVIXGXERL 679
+P+MI S+ CH ++ + I N + ++ GGYF++ G E++
Sbjct: 153 VPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKV 196
>UniRef50_Q60J73 Cluster: Putative uncharacterized protein CBG24658;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG24658 - Caenorhabditis
briggsae
Length = 1381
Score = 33.5 bits (73), Expect = 7.7
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +2
Query: 221 PPKIANPYLQSLGAPHIDSFNY------MLDDGLKFAIADLLPSEFELPSGEKVKVTIDE 382
PP NPY GAP + + L+DG+ F + +LP E+ + ++ ++ +
Sbjct: 1003 PPPRGNPYAPPEGAPRVPNRLIGKPRILCLEDGISFEVKTILPLSGEVFANDRKRIPECQ 1062
Query: 383 AAF---AKPNV--PMDTVGVKS 433
F AKP V P T GV++
Sbjct: 1063 KTFTEDAKPKVFLPFATCGVRN 1084
>UniRef50_Q4Q3P2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1378
Score = 33.5 bits (73), Expect = 7.7
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 347 PSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRS 526
PSGE D A P +TVGV S PT AT + E ++R+ +C+DG +
Sbjct: 650 PSGEAAARKADVPAAPAVEKPAETVGVASDAT-PT------ATLESEKQVRLVVCVDGTA 702
Query: 527 VTI 535
+
Sbjct: 703 TVL 705
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,679,983
Number of Sequences: 1657284
Number of extensions: 15151145
Number of successful extensions: 32179
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 31044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32114
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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