Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C09
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...   113   3e-26
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    50   6e-07
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    40   4e-04
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.92 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    29   1.2  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    28   2.1  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   3.7  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   6.5  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   6.5  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score =  113 bits (272), Expect = 3e-26
 Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 15/220 (6%)
 Frame = +2

Query: 212 YRKPPKIAN--PYLQSLGAPHIDSFNYMLDDGL----------KFAIADLLPSEF-ELPS 352
           ++ PPK     P LQ    PH+DSFN + + GL          K A   +   E   L  
Sbjct: 65  FKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKF 124

Query: 353 GEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVT 532
           G K+   +DE   AKP +        ++ V P E R+R  TYK  L ++ +  ++G    
Sbjct: 125 GNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQ 184

Query: 533 IE-RSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRX 709
            E R +G +PIM+ S  CH   LSP ELI   E ++E GGYF++ G E+L RML++ +R 
Sbjct: 185 SEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRN 244

Query: 710 YPVAIKRVRM-ERCPAXSSHTXXY*YVASPPDQTSXNNVL 826
           +P AI R     R  + S +      V   PDQ+S  N L
Sbjct: 245 HPTAIIRPSFANRGTSYSQYGLSIRCVR--PDQSSLTNTL 282


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
 Frame = +2

Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG 424
           ++ L   H+DS+NY +D  LK  +        ++     +K  +D    A      D + 
Sbjct: 60  VKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFYLKY-LDIRVGAPVRTDADAIQ 118

Query: 425 VKSQVVLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS--LGYLPIMIXSKMCHXADL 598
                + P ECR R  TY   + + +     G+ V   R+  +G +P+M+ S  C  +  
Sbjct: 119 AS---ISPHECRLRDLTYGANIYVDIEYT-RGKQVVRRRNVPIGRMPVMLRSNKCVLSGK 174

Query: 599 SPEELIEKNEHADEWGGYFVIXGXERL 679
           +  E+   NE   + GGYF++ G E++
Sbjct: 175 NEMEMAALNECPLDPGGYFIVKGTEKV 201


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 545 LGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
           +G +PIM+ S  C    +S  EL + NE   + GGYF+I G E++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV 196


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 161  PKKLAQNPSLAYTSHPDYR-KPPKIANPYLQSLGAPHIDSFNYMLDDGLK-FAIADLL 328
            P  L +  +L +  HP+   KP  +  P  ++  A HID  +   D G   F + +LL
Sbjct: 902  PNMLLKEANLYHLQHPEIPLKPDSLLGPEEENATASHIDGSSNASDSGYNAFVLKELL 959


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -3

Query: 231 IFGGFL*SGWLVYANDGFWASFFGFMLI*LR 139
           I+  FL S  LVYAN+GF     GF L  LR
Sbjct: 244 IYKNFLHSAKLVYANEGFRGFLDGFFLRVLR 274


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 742 FHPDPLDGHRVVPSXNQQHTG*TLXAXYYKISTPFISMFIF 620
           F P P  G +VV + N   T  T+   YY +   F+    F
Sbjct: 771 FEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCF 811


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 326 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECR 460
           LP  F+L     VK+ + +A  A+ N+P   V    + + P + R
Sbjct: 140 LPKTFQLDESSVVKILLRKAKVAQENLPPSIVTELKKQLAPLDLR 184


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 307 LQAIVQHIIE*IYVRRSKTLKVRICYFW 224
           L +I+ H+I  +   R+K LK  + Y+W
Sbjct: 49  LPSILMHVIRFVMPSRNKELKKLLYYYW 76


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -3

Query: 429 LTPTVSIGTLGLANAASSIVTLTFSPL----GNSNSDGN 325
           +TP  S+G L   N+ S + TLT SP+     N+++DG+
Sbjct: 31  MTPP-SMGALNANNSNSQLSTLTISPMTYLANNTSTDGS 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,560
Number of Sequences: 5004
Number of extensions: 64614
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)