Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_C09
(911 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein. 147 4e-35
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 147 4e-35
AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens ... 147 4e-35
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 147 4e-35
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 79 3e-14
BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (D... 49 2e-05
AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subu... 49 2e-05
X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa... 44 8e-04
BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DN... 44 8e-04
>BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein.
Length = 952
Score = 147 bits (357), Expect = 4e-35
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 343
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 344 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 523
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 524 SV-TIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVT 700
S I++ LGY+PIM+ SK+C+ +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 701 RRXYPVAIKR 730
RR +P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 147 bits (357), Expect = 4e-35
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 343
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 344 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 523
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 524 SV-TIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVT 700
S I++ LGY+PIM+ SK+C+ +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 701 RRXYPVAIKR 730
RR +P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens
cDNA FLJ10816 fis, clone NT2RP4000997, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 336
Score = 147 bits (357), Expect = 4e-35
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 343
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 344 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 523
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 524 SV-TIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVT 700
S I++ LGY+PIM+ SK+C+ +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 701 RRXYPVAIKR 730
RR +P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 147 bits (357), Expect = 4e-35
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 343
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 344 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 523
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 524 SV-TIERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVT 700
S I++ LGY+PIM+ SK+C+ +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 701 RRXYPVAIKR 730
RR +P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 78.6 bits (185), Expect = 3e-14
Identities = 33/66 (50%), Positives = 51/66 (77%)
Frame = +2
Query: 533 IERSLGYLPIMIXSKMCHXADLSPEELIEKNEHADEWGGYFVIXGXERLPRMLLVTRRXY 712
I++ LGY+PIM+ SK+C+ +L P+ LIE +E A+E GGYF+I G E++ RML++ RR +
Sbjct: 74 IKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNF 133
Query: 713 PVAIKR 730
P+A+ R
Sbjct: 134 PIAMIR 139
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 164 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAI-ADL 325
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ AD+
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQADI 62
>BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide B protein.
Length = 1133
Score = 49.2 bits (112), Expect = 2e-05
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 421
++ L HIDSFNY ++ +K + + EKV D + K N+ +
Sbjct: 36 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKVTSDADPMWYLKYLNIYVGLP 85
Query: 422 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIXSKMC 583
V+ ++ V P ECR R TY + + + R + +G +PIM+ S C
Sbjct: 86 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 145
Query: 584 HXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+P E + NE + GGYF++ G E++
Sbjct: 146 VLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 177
>AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subunit
RPC2 protein.
Length = 1133
Score = 49.2 bits (112), Expect = 2e-05
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +2
Query: 245 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 421
++ L HIDSFNY ++ +K + + EKV D + K N+ +
Sbjct: 36 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKVTSDADPMWYLKYLNIYVGLP 85
Query: 422 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIXSKMC 583
V+ ++ V P ECR R TY + + + R + +G +PIM+ S C
Sbjct: 86 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 145
Query: 584 HXADLSPEELIEKNEHADEWGGYFVIXGXERL 679
+P E + NE + GGYF++ G E++
Sbjct: 146 VLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 177
>X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa
subunit protein.
Length = 1174
Score = 44.0 bits (99), Expect = 8e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIXSKMCHXADLS 601
++P E R R TY L + +T + +G + +G +PIM+ S C L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLT 167
Query: 602 PEELIEKNEHADEWGGYFVIXGXERL 679
+L E NE + GGYF+I G E++
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKV 193
>BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide B, 140kDa protein.
Length = 1174
Score = 44.0 bits (99), Expect = 8e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +2
Query: 440 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIXSKMCHXADLS 601
++P E R R TY L + +T + +G + +G +PIM+ S C L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLT 167
Query: 602 PEELIEKNEHADEWGGYFVIXGXERL 679
+L E NE + GGYF+I G E++
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKV 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,623,780
Number of Sequences: 237096
Number of extensions: 2295252
Number of successful extensions: 3895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3883
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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