Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C06
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    29   0.93 
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    29   1.2  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    28   1.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.6  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 764 PDIPSDFLRTVWTSRLPVNIQTVVASQP---KLNLEXAAELADRIVD 895
           PD+P+D   +  TS + ++++  V   P   KLNL    ++  R+ D
Sbjct: 311 PDLPADLFTSCLTSPIEISVRWYVLQNPFPNKLNLNMLLKIPGRLQD 357


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 800 STPSVESRSECPVRPSTVDVVGIGSAFYLPAP-RVAATVAF 681
           STPS  + S  P  P+T D  G   A YL  P  V +T A+
Sbjct: 304 STPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAY 344


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 530 DSTMYHTVSSQLNQEYARVMKDLLTAPPLMDKYKTFKEQL-IRRITVSREKKTLQLLQH 703
           +S + +    Q   E+  + KDLL      D Y   +EQL  RR T++R++ T+  LQ+
Sbjct: 402 ESDLLYFQDKQSISEFDIIRKDLLEDLIQCDSYVNTREQLRRRRETLNRKRITIAKLQN 460


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 708  SWEIESRANSYNIYSTWP 761
            S+ +E+R  SY++ STWP
Sbjct: 993  SYNLENRTWSYDLISTWP 1010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,583
Number of Sequences: 5004
Number of extensions: 67941
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)