Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C06
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   9.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 678 KKRYSCCNTRSWEIESRANSYNIY 749
           +KRYSC   R  +     NSY  Y
Sbjct: 269 RKRYSCSREREQKSYKNENSYRKY 292


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 812 VTDWSTPSVESRSECPVRPSTVD 744
           V +W  P     +E  VRPSTV+
Sbjct: 571 VAEWEPPRALWPTEWKVRPSTVE 593


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 484 PHLRFFRPEGRHSYRH 437
           P LRF  PE  H  RH
Sbjct: 71  PLLRFENPETHHPIRH 86


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 93  IVDSHIC*SFVLCLVNFLIICSVSCCRNI*LFLVLFRLIYRHR 221
           + DS +    +LC  + L +C++S  R +    V   LIY  R
Sbjct: 110 LCDSWVSLDILLCTASILSLCAISIDRYL---AVTQPLIYSRR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,860
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)