Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C05
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    35   0.097
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899...    33   0.39 
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141...    30   2.8  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    28   8.5  
03_04_0220 - 18741485-18741915,18742007-18742190                       28   8.5  
01_06_0513 - 29944888-29945943                                         28   8.5  

>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 34.7 bits (76), Expect = 0.097
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = -2

Query: 267 PKCRRPSLLPFSCPT*RHGGVALKIGL*WGILLRNXGDLYTSAFTHTRTVA 115
           PK   PSLLP S  T  H  + +++ +  G+LL N  DL  + FTHT T A
Sbjct: 342 PKSTIPSLLPPSGFT-IHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFA 391


>02_04_0628 +
           24589313-24589472,24589604-24589765,24589850-24589983,
           24590108-24590275,24590481-24590562,24590734-24591512
          Length = 494

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 577 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 485
           R++ CD  PS  R   RL C CSYQ    +SPR
Sbjct: 29  RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61


>01_01_0166 +
           1412918-1413309,1413845-1414006,1414534-1414720,
           1415221-1415646,1416028-1416036,1416361-1416768,
           1417397-1417654
          Length = 613

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 580 RRLVFCDQIPSRPYRRLRCGCSYQDPTHRSPRLSFQICLR 461
           +R++ CD  P+RP+R + CG  +    +  P   F+  +R
Sbjct: 146 KRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKFKHSIR 185


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
 Frame = +1

Query: 355 TAPGXLGPGGDSTNYGG----------RLDWANKNAQAAIDINRQIGGRSGMTASGSGVW 504
           T+ G  G GG+   +GG           L   ++ A+ ++++  Q+GG  G+ ++G G  
Sbjct: 103 TSAGEFGGGGEVRVWGGGNRSGEAAFISLQSGSRVAKRSMELGVQMGGEMGLGSNGGG-- 160

Query: 505 DLDKNTHISAGGMVSKEFGHRRPD 576
                    AGG V  E  HR  D
Sbjct: 161 --------GAGGQVHDEMPHRNVD 176


>03_04_0220 - 18741485-18741915,18742007-18742190
          Length = 204

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 485 PRAPVCGI-LIRTPTSQPAVWSRRNLVTEDQTSVFKQRSGMSGDCQHNPII 634
           P AP C + L  +P S PAV  R+  +     S+    SG +   + +P++
Sbjct: 149 PEAPSCDLGLCLSPGSPPAVGERKPALRPGTPSMSSDESGTTTGGERDPVL 199


>01_06_0513 - 29944888-29945943
          Length = 351

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 PSEAYFQSDTPVTSRGTRKWEEGRSSALWD 270
           P+ A   +  P  +RGT +W EG + AL D
Sbjct: 80  PATATATAPAPTPARGTPEWSEGSTFALLD 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,981,919
Number of Sequences: 37544
Number of extensions: 523570
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)