Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C05
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.17 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.17 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +3

Query: 114 SLQSWCV*TQKYTGLLXYEEEYPIRGLFSKRHPRDVTWDTKMGGGKVFGTLGQNDDGLFG 293
           S+Q W      Y G+L +     I G+F  +HP D+  +      ++     +N+   F 
Sbjct: 332 SVQQW----NSYWGILGFPSAPTIDGIFLPKHPLDLLREADFKDTEILIGNNENEGTYFI 387

Query: 294 KAGYNREIFNDDR 332
              +N +IF  D+
Sbjct: 388 LYDFN-DIFEKDQ 399


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +3

Query: 114 SLQSWCV*TQKYTGLLXYEEEYPIRGLFSKRHPRDVTWDTKMGGGKVFGTLGQNDDGLFG 293
           S+Q W      Y G+L +     I G+F  +HP D+  +      ++     +N+   F 
Sbjct: 332 SVQQW----NSYWGILGFPSAPTIDGIFLPKHPLDLLREADFKDTEILIGNNENEGTYFI 387

Query: 294 KAGYNREIFNDDR 332
              +N +IF  D+
Sbjct: 388 LYDFN-DIFEKDQ 399


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 180 GILLRNXGDLYTSAFTHTRTVAMKNSNLEFILSCLWF 70
           G LL + G ++       R +   +S +E   SC W+
Sbjct: 161 GYLLYSLGQVFMLCIFGNRLIEESSSVMEAAYSCHWY 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,168
Number of Sequences: 438
Number of extensions: 5382
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)