Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C02
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          26   0.45 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           26   0.45 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.5  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 WHGPRRSGNEKERIRNESSAPRSL*QNWRSVLGSQAVAS 403
           W   RR  ++KE++ N+ S PRS      S L  Q+VAS
Sbjct: 135 WFQNRRMKHKKEQM-NKVSTPRSSPAETASSLSPQSVAS 172


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 WHGPRRSGNEKERIRNESSAPRSL*QNWRSVLGSQAVAS 403
           W   RR  ++KE++ N+ S PRS      S L  Q+VAS
Sbjct: 126 WFQNRRMKHKKEQM-NKVSTPRSSPAETASSLSPQSVAS 163


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 428 IRTLPSACRLRLLDCRERNASFVTVSGGRWTHCGFAPFHFPNVADRAINLTFAAVAIH 255
           +RT       R +DC +  +    ++    TH G  PF  P V DR  + + ++V  H
Sbjct: 13  LRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCP-VCDRRFSQS-SSVTTH 68


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 428 IRTLPSACRLRLLDCRERNASFVTVSGGRWTHCGFAPFHFPNVADRAINLTFAAVAIH 255
           +RT       R +DC +  +    ++    TH G  PF  P V DR  + + ++V  H
Sbjct: 269 LRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCP-VCDRRFSQS-SSVTTH 324


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 SAVKQSQATSGGKCTYSEMERDRI 452
           SAV +S+ TSGGK      ERD I
Sbjct: 7   SAV-ESEITSGGKSKGDPTERDLI 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,329
Number of Sequences: 336
Number of extensions: 4217
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)