Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C02
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    67   3e-12
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.7  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   8.1  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
 Frame = +1

Query: 493 LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 660
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 661 LNKYIYLMGLLDRNEHLFYRFVADXVADMMPLCTLRRLAWPXQKXXLVYRRPRGLFITI 837
           L K +YL  L   N+ LFY  ++  + +M+P+          ++   +YR P G ++ I
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDI 128


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -2

Query: 359 TVSGGRWTHCGFAPFHFPNVADRAINLTFAAVAIHSAR--QIFHFQNFTKELLLEISEIR 186
           T++   +T   +   + PN  D+   +   + A HS R   IFH   F   +      +R
Sbjct: 529 TINATLYTFFTYKKLNTPNYVDQHAMIRTDSAAFHSRRYIHIFHHIQFMLSIPCVAEIVR 588

Query: 185 YIDTFVHKSFTYYNLFK 135
               F+ +   ++NLF+
Sbjct: 589 EDLKFLKQYADFFNLFQ 605


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 412 EGSVRIAKWNVIVSDYGAPGXGQPTSGLSGL 504
           +G+   AK++V   +YGA G G P    SG+
Sbjct: 118 QGTTMPAKYDVPAEEYGAFGGGFPIKLTSGI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,141
Number of Sequences: 5004
Number of extensions: 68689
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)