Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C02
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 354 HCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 449
           HC   GVP   +   +AT      Y E+ R+R
Sbjct: 730 HCQAQGVPTPTIVWKKATGSKSGEYEEL-RER 760


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 354 HCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 449
           HC   GVP   +   +AT      Y E+ R+R
Sbjct: 726 HCQAQGVPTPTIVWKKATGSKSGEYEEL-RER 756


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = -2

Query: 770 RRSVHNGIMSATXSATKR*NRCSL-RSKSPIR*MYLLSGFSYLSIESLH--SSTCS--SC 606
           R SVHNG  + +  + +  +RCS+ R K  I   Y  +        +L    S CS  S 
Sbjct: 311 RGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKCSQTSV 370

Query: 605 VLTRGGNNPCMPKS*RSSMVKAMPLLRPGCLRWSRPER 492
             + G  +  +  + RS+ +K   + R G  R  RP R
Sbjct: 371 HYSNGQTHSQLCPTPRSTHLKVSGINRVGSTR--RPSR 406


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 158 FTYYNLFKEKRKDSRE 111
           F YYN+FK  R  +R+
Sbjct: 361 FLYYNIFKALRNRARK 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,411
Number of Sequences: 438
Number of extensions: 5407
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)