Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B21
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.26 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   10.0 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   10.0 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +1

Query: 625 PPPPPXXXXGXXXXXPPPPXXXXXXPXGXKNPXPXXFXXGPXXFSP 762
           P PPP    G     PPPP      P     P P     G   ++P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 624 PPPPPXXGXGXXXXXXPPPXXPXXXPXG 707
           PPPPP  G        PPP  P     G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +2

Query: 671 PPPLXXXTXXPXGXKTPPXXXXXXAXXLFPXXXGPXPXGXGXPPPPGAP 817
           PP +   T  P     PP           P    P   G G PPPP  P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 625 PPPPPXXXXGXXXXXPPPPXXXXXXPXGXKNP 720
           PPPPP          PPPP          K P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 19/75 (25%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
 Frame = +3

Query: 609 KGXXIPPPPPXXGXGXXXXXXPPPXXPXXXPXGXEKPXPXXXXXXPXXFFPXGGXPXXGG 788
           +G   PPPPP           PPP            P P           P G       
Sbjct: 356 QGRSAPPPPPP-RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414

Query: 789 XXXP-PPRGPPXXXP 830
              P PP  PP   P
Sbjct: 415 PPVPTPPSLPPSAPP 429



 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/54 (27%), Positives = 15/54 (27%)
 Frame = +2

Query: 671 PPPLXXXTXXPXGXKTPPXXXXXXAXXLFPXXXGPXPXGXGXPPPPGAPXXXPP 832
           PPPL            PP      A  L P            P PP  P   PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,717
Number of Sequences: 5004
Number of extensions: 33291
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)