Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_B19
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.12
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.37
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.65
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.86
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 6.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.1
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 500 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 676
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 677 SNTTGTLS 700
+T + S
Sbjct: 361 PTSTSSTS 368
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 491 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAP 667
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 668 LTPSNTTGTLSPSMYESDVMFF 733
T S++T T S S F+
Sbjct: 658 STSSSSTATSSTSFASESSSFY 679
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 500 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 676
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 677 SNTTGTLS 700
+T + S
Sbjct: 307 PTSTSSTS 314
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 500 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 676
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 677 SNTTGT 694
++ T
Sbjct: 415 PTSSST 420
Score = 29.9 bits (64), Expect = 0.49
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 500 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 676
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 677 S-NTTGTLSPSM 709
+ T T S S+
Sbjct: 250 TVPPTSTSSTSI 261
Score = 29.9 bits (64), Expect = 0.49
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 506 PKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 682
P T + S P P T+ TS S PP NST + +T V + SST P P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321
Query: 683 TTGT 694
T+ T
Sbjct: 322 TSST 325
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 497 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 676
S P T + + S+PP +T + + PP + S+ +S + + T +PL
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS-TSTPPPPASTSSTGTSSSPLLS 388
Query: 677 SNTTGTLSPSM 709
++T+ T S S+
Sbjct: 389 TSTSCTTSTSI 399
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.3 bits (65), Expect = 0.37
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 494 HSVTPKTKPARKSPGSLPPCWKTTEF--TSRSCPPRT--NST*SSITRKVLVMTVSSTVI 661
H+ T T P S + TT T+ + PP T NST + + V T +TV+
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVV 134
Query: 662 APLTPSNTTGTLSPSMYESDVMF 730
P T NTT + P+ + + F
Sbjct: 135 PPTTHVNTTTVVPPTTHANTTSF 157
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 560 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 703
+T TS PP T+ ++ T ++T + P T NTT T +P
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 500 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLVMTVSSTVIAPLTP 676
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 677 SNTTGTLSPSMY 712
NTT + P+ +
Sbjct: 128 VNTTTVVPPTTH 139
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 582 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 481
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.86
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 226 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 369
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 193 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 309
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 684 VFEGVSGAITVDDTVIT 634
V G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 430 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 522
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 329 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 150
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 149 EASAHTARTKA 117
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,171
Number of Sequences: 5004
Number of extensions: 68400
Number of successful extensions: 276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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