Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_B17
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 210 2e-55
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 99 4e-22
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 98 2e-21
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 97 2e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 96 5e-21
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 87 2e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 83 4e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 81 2e-16
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 78 2e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 77 3e-15
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 77 3e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 75 1e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 74 3e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 72 1e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 69 1e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 3e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 65 1e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 63 6e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 61 2e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 8e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 45 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 44 4e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 43 5e-05
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.22
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.89
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 28 1.6
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 8.3
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 210 bits (513), Expect = 2e-55
Identities = 100/156 (64%), Positives = 121/156 (77%)
Frame = +2
Query: 374 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 553
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 554 PIALSGKDVLARAKNGTGXTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIEL 733
PIALSG+D+LARAKNGTG T A+ IP LE+VD KK IQ LI+VPTRELALQTSQ+C L
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTL 135
Query: 734 AKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIAPLG 841
KH +++VMVTTGGT LRDDI+R+ V +++ G
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPG 171
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 99 bits (238), Expect = 4e-22
Identities = 50/126 (39%), Positives = 76/126 (60%)
Frame = +2
Query: 464 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQ 643
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTG T + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 644 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQV 823
+D QALI+ PTRELA Q ++ + L ++ GGT +RDD+ + V V
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 824 IIAPLG 841
++ G
Sbjct: 141 VVGTPG 146
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 97.9 bits (233), Expect = 2e-21
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 2/184 (1%)
Frame = +2
Query: 296 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 475
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 476 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQVDP- 652
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+G T A+ IP++E +
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 653 -KKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVII 829
+ALI+ P RELALQT ++ + +K TD+R + GG +L + + +++
Sbjct: 135 LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVV 194
Query: 830 APLG 841
A G
Sbjct: 195 ATPG 198
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 97.5 bits (232), Expect = 2e-21
Identities = 51/141 (36%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Frame = +2
Query: 428 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 607
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 608 XTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGT 778
T A+ +P+LE++ PKK T + LI+ PTRELA+Q + ++A TDI V + GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 779 NLRDDIMRIYQNVQVIIAPLG 841
+L+ + + ++IA G
Sbjct: 369 SLKLQEQELRKRPDIVIATPG 389
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 96.3 bits (229), Expect = 5e-21
Identities = 46/123 (37%), Positives = 74/123 (60%)
Frame = +2
Query: 458 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVL 637
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTG T + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 638 EQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNV 817
+ +D QALI+ PTRELA+Q + + L H +++ GGT++ +DI ++
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 818 QVI 826
V+
Sbjct: 141 HVV 143
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 87.4 bits (207), Expect = 2e-18
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Frame = +2
Query: 464 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQ 643
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G G T + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 644 VDPKKDTIQALIVVPTRELALQTSQICIELAKH-TDIRVMVTTGGTNLRDDI 796
++P + L++ TRELA Q +K+ D+R V GG N++ D+
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDM 164
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 83.4 bits (197), Expect = 4e-17
Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +2
Query: 275 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 448
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 449 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 607
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 608 XTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 754
T A+ + +L +VD QA+ + P+RELA Q + E+ K+T+++
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 81.0 bits (191), Expect = 2e-16
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +2
Query: 464 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLE- 640
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+G T AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 641 -----QVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMR 802
Q+D + I AL++VPTRELA Q + +L + TN D + R
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 77.8 bits (183), Expect = 2e-15
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Frame = +2
Query: 473 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQVDP 652
F L E+L + + G+ KP PIQ IP A G D++ +A G+G T A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 653 KKDT--IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVI 826
D +QAL+V PTRELA Q Q + +IRVM TGG ++ + ++ V+
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVV 246
Query: 827 IAPLG 841
+A G
Sbjct: 247 VATPG 251
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 77.0 bits (181), Expect = 3e-15
Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Frame = +2
Query: 413 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 592
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 593 KNGTGXTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRV 757
K G+G T A+ IP +E + P+ T +I+ PTRELALQ + EL K+
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKYHHQTF 192
Query: 758 MVTTGGTNLRDDIMRIYQNVQVIIAPLG 841
+ GG N R + ++ + V +++A G
Sbjct: 193 GIVIGGANRRAEADKLVKGVNLLVATPG 220
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.0 bits (181), Expect = 3e-15
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Frame = +2
Query: 464 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQ 643
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+G T +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 644 VDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIY 808
++ + D L++ PTRELA+Q Q C + K + IR GG I +
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 809 QNVQVIIAPLG 841
+ V++ IA G
Sbjct: 244 RGVEICIATPG 254
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 75.4 bits (177), Expect = 1e-14
Identities = 45/130 (34%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Frame = +2
Query: 461 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLE 640
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+G T A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 641 QVD---PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQ 811
++ K + L+V PTRELA+QT + L + T+++ +V GG + + R +
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAK 284
Query: 812 NVQVIIAPLG 841
N VII G
Sbjct: 285 NASVIIGTPG 294
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Frame = +2
Query: 446 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXT 613
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+G T
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 614 GAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDD 793
A+ +PV++++ A+++ PTRELA Q S+ + +R +V GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 794 IMRIYQNVQVIIAPLG 841
+ + + V++ G
Sbjct: 158 AVALSKKPHVLVCTPG 173
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 71.7 bits (168), Expect = 1e-13
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Frame = +2
Query: 479 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQVDPKK 658
L + + I G+EKP+ IQ +IP SG+DV+ AK G+G T A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 659 -----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQV 823
+ A+I+ PTRELA+Q + C K +IR GG ++D I + + ++
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 824 IIAPLG 841
++ G
Sbjct: 545 VVCTPG 550
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 68.5 bits (160), Expect = 1e-12
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Frame = +2
Query: 536 IQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 703
IQ+ IP AL G+D+L AK G+G T A+ +P++E + KK D + AL++ PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 704 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIAP 835
+QT + +++ + + GG N +++ R+ + ++ P
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRMNILVCTP 168
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.3 bits (157), Expect = 3e-12
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 18/174 (10%)
Frame = +2
Query: 374 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 523
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 524 KPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPV---LEQVDPKKDTIQ-----ALI 679
+PS IQ A+IP+ L KD++ A+ G+G T A+ IP+ + ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 680 VVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIAPLG 841
+ PTRELA Q + A+ R + GG + ++ Q +++A G
Sbjct: 331 LAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPG 384
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 65.3 bits (152), Expect = 1e-11
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Frame = +2
Query: 458 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVL 637
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+G T + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 638 E----------QVD--------PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMV 763
VD P+K LI+ PTREL Q + + + +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 764 TTGGTNLRDDIMRIYQNVQVIIAPLG 841
GG ++R I +I Q ++ A G
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPG 314
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.9 bits (146), Expect = 6e-11
Identities = 32/106 (30%), Positives = 58/106 (54%)
Frame = +2
Query: 524 KPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 703
+P+ IQE I L G++ + AK G+G T A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 704 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIAPLG 841
+Q + L + +++ + GG ++ + + + V++A G
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +2
Query: 464 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQ 643
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+G T AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 644 V---DPKKDTIQALIVVPTRELALQTSQICIEL 733
V D + + ALIV PTRELA Q + EL
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 49.2 bits (112), Expect = 8e-07
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Frame = +2
Query: 515 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGXTGAYCIPVLEQV---DPKKDT--IQAL 676
G+EK +P+Q+ + + + ++ + +AK GTG T A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 677 IVVPTRELALQTSQICIELAKHTDIRVMVTTGG-TNLRDDIMRIYQNVQVIIAPLG 841
I+ PTRELALQ + +L T IRV GG + +R++ N ++IA G
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPG 172
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.2 bits (102), Expect = 1e-05
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 536 IQEASIPIALSGKDVLARAKNGTGXTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQT 712
IQ +IP S +D+LA A G+G T AY P+L+++ +A+IV PTREL Q
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 713 SQICIELAKHTDIRVM 760
+ +L+ T ++++
Sbjct: 132 YRQAEKLSFGTSLKII 147
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.6 bits (98), Expect = 4e-05
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Frame = +2
Query: 527 PSPIQEASIPIALS--GKDVLARAKNGTGXTGAYCIPVLEQVD--PKK-----DTIQALI 679
P+ IQ +P L+ KD A+ G+G T AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 680 VVPTRELALQTSQICIELAKHTDIRVMVT---TGGTNLRDDIMRIYQNVQVIIAPLG 841
+ PTREL Q + +L + +V+ GG + + RI + V ++I G
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPG 278
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 5e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 554 PIALSGKDVLARAKNGTGXTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQICIE 730
P+ G DV A G+G T +Y IP+++ + + ++ +++VPTREL +Q ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 731 LAKHTDIRVMVTTGGTNLRDDIMRI 805
++V TG +LR + ++
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQL 252
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 793 IISKVCASCSNHYTNVCVFCQFNTN 719
I+ CA C NH ++C+ CQ NT+
Sbjct: 36 IVVDNCAICRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.89
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -2
Query: 771 PVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGSTCSKTGIQ*APVXPV-PF 595
P+ ++ + ASS + V SANS T+ + +S + ST + T P+ V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST-TATSASSTPLTSVNST 365
Query: 594 LALASTSFPLRAI----GIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVSVTS 436
A +++S PL ++ AS ++ + ++++ N+S+ LP SV+S
Sbjct: 366 TATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 820 LYILINTHYIISKVCASCSNHYTNVCVFCQFN 725
+Y LI+ + I +C+ H VC+FC F+
Sbjct: 222 VYGLISLWWAIRCICSRTKLHLVQVCLFCWFS 253
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 71 NSCDVVVEYRVSSPFLNFYLA 133
N ++VEY++ S FL FYLA
Sbjct: 231 NDVPLLVEYKMESGFLRFYLA 251
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 305 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 451
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,289
Number of Sequences: 5004
Number of extensions: 61776
Number of successful extensions: 222
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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