Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B13
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...   128   1e-30
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   2.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.6  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.6  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   8.1  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score =  128 bits (308), Expect = 1e-30
 Identities = 54/113 (47%), Positives = 77/113 (68%)
 Frame = +3

Query: 300 RQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILF 479
           +Q+VLV + RG+ +R RHL+ D+  +MPH K +SK++    LY +NE++E+ NCN    F
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101

Query: 480 EGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSXAFVIFRST 638
           E R+  DLY+ I+  PNGP+ KF VEN++TM EL MTGN L+GS   + F  T
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKT 154



 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +2

Query: 653 PHYCLLKELLVQIXGVPNYHPXSQPFFDHVYTFMVLDHRIWFXNYXI------LSEXGAL 814
           PH  ++KELL Q  G+P     S+PF D V T  + D +IWF NY I        +   L
Sbjct: 159 PHLKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTL 218

Query: 815 XEIXXRFVLNPXXIXXGSF 871
            EI  RFV+    I  GSF
Sbjct: 219 IEIGPRFVMTIINILEGSF 237


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 471 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 593
           +L E RK  +  + + ++PNGPS  F + N+ T  E+   G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 526 GILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLL 410
           GIL   +YK  + L + +M L  FF S++ + T+  +++
Sbjct: 134 GILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 249 QXRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKN 422
           +  M + P+P  +K  N++R L  ++   N R     +++KK+     ++S  +  KN
Sbjct: 563 EHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKN 620


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 677 ILSVSSSEDLFVNCGSKDNKGXRSSQTIASHFQFPHSINVFHQKFSTWSIWYIRYPHI 504
           I S+ S +  F     K+N G  S+  +ASH  F  ++N    +F   + W + + HI
Sbjct: 371 IASLLSLQVAFPKANRKNNPGTPSASLVASHIMF--TLN----RFMHSTDWQLGFRHI 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,448
Number of Sequences: 5004
Number of extensions: 67457
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)