Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B13
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...   149   3e-36
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     30   2.5  
Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   4.3  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score =  149 bits (360), Expect = 3e-36
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
 Frame = +3

Query: 249 QXRMSSDPAPKQVK-WINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNL 425
           Q + +++   K+ + W NR+RVLV   RG + R R+LM+DIK L+PH K +SK+++ K+L
Sbjct: 44  QPKQATEETRKRAELWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSL 103

Query: 426 YVVNEISEMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLR 605
            V+NEI+EMKNC K + FE RK +D Y+W+SN+  GPS KFLV N++TM ELKM+GNCLR
Sbjct: 104 NVLNEIAEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLR 163

Query: 606 GSXAFVIFRSTIYKK 650
            S   + F     KK
Sbjct: 164 ASRPVLSFDDAFDKK 178



 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = +2

Query: 647 KDPHYCLLKELLVQIXGVPNYHPXSQPFFDHVYTFMVLD-HRIWFXNYXILSEXGALXEI 823
           K P   L+K +L+Q  G P++HP SQPF DHV+ F V +  +IWF N+ I+ E   L E+
Sbjct: 177 KKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEV 236

Query: 824 XXRFVLNPXXIXXGSF 871
             RFVL    +  GSF
Sbjct: 237 GPRFVLEMVRLFAGSF 252


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMW 512
           I   H+ L++DIK+            +S  L +V+    +K C KC++F+G  + D+Y +
Sbjct: 222 ITAHHQELLQDIKR---------NFSKSLLLILVSYCIVLK-CFKCLIFQGTSINDIYHF 271

Query: 513 I 515
           I
Sbjct: 272 I 272


>Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical
           protein F22G12.7 protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 273 APKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEM 452
           A +  K I  +++ +  ++   ++     EDI KL   +  E K+ ++  + + +EI++ 
Sbjct: 170 AGEDSKTIANRQIALSGVKNEFYKLAEASEDISKLQGINCIEDKINKNVAVEIFSEIADA 229

Query: 453 KNCNKCIL--FEGRKM 494
           +NC    +  FE  K+
Sbjct: 230 RNCMNTFVDSFENEKI 245


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCIL 476
           +N +H           P H   ++M+RSK  +V+     +KNC++ +L
Sbjct: 137 VNLQHTLTPSPYASSTPKHTPTNQMDRSKISFVIKPQINLKNCSRELL 184


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 336 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 377


>Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 105 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 146


>Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 103 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 144


>Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 161 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 202


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 336 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 377


>Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 105 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 146


>Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 103 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 144


>Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 464
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 161 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,886
Number of Sequences: 27780
Number of extensions: 370746
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)