Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_B12
(1405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 34 0.21
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.85
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.85
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.85
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.0
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 34.3 bits (75), Expect = 0.21
Identities = 19/82 (23%), Positives = 23/82 (28%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P P P T P PPP + P+ P
Sbjct: 176 PPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNP 235
Query: 858 QSPPRHAATTDIXSPXTPRPPA 923
+P A + P PPA
Sbjct: 236 PAPENTTAKVETTKPTKAAPPA 257
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.85
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P P +P R P PPP +P S P P
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPR-GSPPTGSLPPPQAGGSPPPAGTGSPPPP---PRQKR 337
Query: 858 QSPPRHAAT--TDIXSPXTPRPP 920
Q+P R T SP T RPP
Sbjct: 338 QAPERSPPTGSPPTGSPPTGRPP 360
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/75 (24%), Positives = 23/75 (30%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P A +P P G PPP +P + P +
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 858 QSPPRHAATTDIXSP 902
PPR + T P
Sbjct: 300 PPPPRGSPPTGSLPP 314
Score = 29.1 bits (62), Expect = 7.9
Identities = 22/81 (27%), Positives = 25/81 (30%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PP P P +P + P G PPP +P S P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGS 288
Query: 858 QSPPRHAATTDIXSPXTPRPP 920
PPR SP P PP
Sbjct: 289 PPPPR------AGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.85
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P P +P R P PPP +P S P P
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPR-GSPPTGSLPPPQAGGSPPPAGTGSPPPP---PRQKR 358
Query: 858 QSPPRHAAT--TDIXSPXTPRPP 920
Q+P R T SP T RPP
Sbjct: 359 QAPERSPPTGSPPTGSPPTGRPP 381
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/75 (24%), Positives = 23/75 (30%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P A +P P G PPP +P + P +
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 858 QSPPRHAATTDIXSP 902
PPR + T P
Sbjct: 321 PPPPRGSPPTGSLPP 335
Score = 29.1 bits (62), Expect = 7.9
Identities = 22/81 (27%), Positives = 25/81 (30%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PP P P +P + P G PPP +P S P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGS 309
Query: 858 QSPPRHAATTDIXSPXTPRPP 920
PPR SP P PP
Sbjct: 310 PPPPR------AGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.85
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P P +P R P PPP +P S P P
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPR-GSPPTGSLPPPQAGGSPPPAGTGSPPPP---PRQKR 343
Query: 858 QSPPRHAAT--TDIXSPXTPRPP 920
Q+P R T SP T RPP
Sbjct: 344 QAPERSPPTGSPPTGSPPTGRPP 366
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/75 (24%), Positives = 23/75 (30%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PPP P A +P P G PPP +P + P +
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 858 QSPPRHAATTDIXSP 902
PPR + T P
Sbjct: 306 PPPPRGSPPTGSLPP 320
Score = 29.1 bits (62), Expect = 7.9
Identities = 22/81 (27%), Positives = 25/81 (30%)
Frame = +3
Query: 678 PPPXXXXPXPAXXXTPHXXDTXRDXXPXPXGXPPPXXXRNPXXXXRXSASXPLHXPTTXX 857
PP P P +P + P G PPP +P S P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGS 294
Query: 858 QSPPRHAATTDIXSPXTPRPP 920
PPR SP P PP
Sbjct: 295 PPPPR------AGSPPPPPPP 309
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 677 PPPAXRPTXXXXMXXXXPXXHAAXRXPXPPGRTXATXXPEPXXPPP 814
PPP P M P P P R P P PPP
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,696
Number of Sequences: 27780
Number of extensions: 153114
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3985757674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -