Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B06
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.55 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.72 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.95 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.7  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 558 PPPFXPXXXXPXXPPPPLPXXXPXPXXGXPXFL*XPPPHXXG 683
           PPP  P    P   P P+P   P P  G P     PPP   G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGP----PPPPPPPG 769



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +2

Query: 590 KXXPPPPSXXXTXAXXXXPXXSLXAAPXXXGAPXPSXFEXTLPXGAPPPXQXP 748
           K  PPPP           P      AP   G P P         G PPP   P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 824 PHXXPPPPXCXXRXPXXPPPXXXKXXGXXXPPXXPP 931
           P   PPP       P  PPP      G   PP  PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 839 PPPXCXXRXPXXPPPXXXKXXGXXXPPXXPPHSV 940
           PPP      P  PPP          PP  PP +V
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 543 PLXGXPPPFXPXXXXPXXPPPPLPXXXPXPXXG 641
           P+ G PPP  P        PPP P   P    G
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 540 PPLXGXPPPFXPXXXXPXXPPPPLP 614
           P + G PPP  P       PPPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 824 PHXXPPPPXCXXRXPXXPPPXXXKXXGXXXPPXXPP 931
           P   P PP         PPP      G   PP  PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 35/139 (25%), Positives = 42/139 (30%), Gaps = 4/139 (2%)
 Frame = +2

Query: 329 KKKPXGGXPXXPNXXXXGGXPXGXLXXKXXXXXPKXPPXXENPVLXXPXXXXXXGXXGXK 508
           KK+P    P  P+    G  P G          P  PP   N     P           +
Sbjct: 308 KKRPP--PPPPPSRRNRGKPPIGN-GSSNSSLPPPPPPPRSNAAGSIPLPPQG------R 358

Query: 509 XXXPXXPXXXXPSXG-XPPPFXTXXXXXKXXPPPPSXXXTXAXXXXP--XXSLXAAPXXX 679
              P  P    PS G  PPP  +         PPP+     A    P    S  + P   
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418

Query: 680 GAP-XPSXFEXTLPXGAPP 733
             P  P     +LP  APP
Sbjct: 419 TPPSLPPSAPPSLPPSAPP 437



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = +1

Query: 601 PPPFPXXNQXLXXXPPXFFNXRPXTKXGASPLXXRXNPPXGXPAPPTXPXXXXXPPP 771
           PPP P  ++     PP   N    +     P   R N     P PP        PPP
Sbjct: 311 PPPPPPPSRRNRGKPP-IGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 836 PPPPXCXXRXPXXPPPXXXKXXGXXXPPXXPPHS 937
           PPPP    R    PP           PP  PP S
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +3

Query: 543  PLXGXPPPFXPXXXXPXXPPPPLPXXXPXPXXGXPXFL*XPPP 671
            P  G PP   P    P  PPP      P P  G P     PPP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP---VPPP 1213



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 540  PPLXGXPPPFXPXXXXPXXPPPPLPXXXPXPXXGXP 647
            PP    PP   P    P  PPP      P P  G P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +3

Query: 540  PPLXGXPPPFXP--XXXXPXXPPPPLP 614
            PP+   PPP  P      P  PPPPLP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 540 PPLXGXPPPFXPXXXXPXXPPPPLP 614
           PP    PPP  P    P  PPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 31/139 (22%), Positives = 33/139 (23%), Gaps = 1/139 (0%)
 Frame = +2

Query: 518 PXXPXXXXPSXGXPPPFXTXXXXXKXXPPPPSXXXTXAXXXXPXXSLXAAPXXXGAPXPS 697
           P  P    P    PPP        +  PPPP           P   +   P     P P 
Sbjct: 208 PPPPMHHKPGEHMPPP-PMHHEPGEHMPPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPM 264

Query: 698 XFEXTLPXGAPPPXQXPXXXQXXXXXXXXXXXXXXXXXQXXPP-HXXPPPPXCXXRXPXX 874
             E       PP    P                         P    PPPP         
Sbjct: 265 HHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 324

Query: 875 PPPXXXKXXGXXXPPXXPP 931
           PPP      G   PP  PP
Sbjct: 325 PPPPMHHEPGEHMPP--PP 341



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 29/137 (21%), Positives = 31/137 (22%), Gaps = 1/137 (0%)
 Frame = +2

Query: 527 PXXXXPSXGXPPPFXTXXXXXKXXPPPPSXXXTXAXXXXPXXSLXAAPXXXGAPXPSXFE 706
           P    P    PPP        +  PPPP           P   +   P     P P   E
Sbjct: 198 PAHHEPGEHMPPP-PMHHKPGEHMPPPPMHHEPGEHMPPPP--MHHEPGEHMPPPPMHHE 254

Query: 707 XTLPXGAPPPXQXPXXXQXXXXXXXXXXXXXXXXXQXXPP-HXXPPPPXCXXRXPXXPPP 883
                  PP    P                         P    PPPP         PPP
Sbjct: 255 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314

Query: 884 XXXKXXGXXXPPXXPPH 934
                 G   PP    H
Sbjct: 315 PMHHEPGEHMPPPPMHH 331


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 670 GGGX*RXXGXPXXGXGXXXGRGGG-GXFGXXXXGXKGGGXPXRGG 539
           GGG     G P    G   G GGG G FG    G  GGG    GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF-GGGPGGHGG 270



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 791 EGRXGXXGGGFXXXXGXVGGAGXPXGGF 708
           EG  G  GGG     G +GG G   GGF
Sbjct: 234 EGGPGGFGGGPGGFGGGLGGFGGGPGGF 261



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = -2

Query: 667 GGX*RXXGXPXXGXGXXXGRGGG-GXFGXXXXGXKGGGXPXRGG 539
           GG     G P    G   G GGG G FG    G  GG     GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +3

Query: 540 PPLXGXPPPFXPXXXXPXXPPPPLPXXXPXPXXGXPXFL*XPPP 671
           PPL   P P  P    P  P  P+P     P  G P     P P
Sbjct: 107 PPLPNEPVPEEPLPGEPPLPDEPVP---EEPLPGEPPLPNEPVP 147


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/53 (33%), Positives = 19/53 (35%)
 Frame = -2

Query: 697 RGXRRPXXXGGGX*RXXGXPXXGXGXXXGRGGGGXFGXXXXGXKGGGXPXRGG 539
           RG R     G G     G    G G    RGGG        G +GG    RGG
Sbjct: 8   RGGRGGSRGGRGGFNG-GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = -2

Query: 640 PXXGXGXXXGRGGGGXFGXXXXGXKGG-GXPXRGG 539
           P        GRGG G F     G +GG G   RGG
Sbjct: 127 PKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGG 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,242
Number of Sequences: 5004
Number of extensions: 19236
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)