Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B04
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   112   8e-26

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  112 bits (269), Expect = 8e-26
 Identities = 51/94 (54%), Positives = 65/94 (69%)
 Frame = +1

Query: 514 CSKEVATAIRGAIILANXSVSXVXTGXXGNXIGKPXTVPCXVTGKCGSVTVRLIPXPXGT 693
           C+KEVATAIRGAII+   S+  +  G  G  +G P TVP  V+GKCGSVTVRL+P P G 
Sbjct: 116 CAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGA 175

Query: 694 GIVSAXVPKKLLXMAGVQDXYTSAXGSXWXLGKF 795
           G+V+A V K+ L +AG++D YT + GS   LG F
Sbjct: 176 GLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209



 Score =  102 bits (245), Expect = 6e-23
 Identities = 59/104 (56%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
 Frame = +3

Query: 210 RGPGRGXGXCKEDX-KEWVPVTKLXRLVXSRKNRXTXRAFTVFYLPINX--IRDH*FLSS 380
           RG GRG    K D  KEWVPVTKL RLV + K +     + ++ LPI    I D+ FL  
Sbjct: 17  RGRGRGRRGAKRDEEKEWVPVTKLGRLVKAGKIKSIEEIY-LYSLPIKEYQIVDY-FL-- 72

Query: 381 XPSLNDXVLXIMPVQKQTRAGQRTRFKAFVAIGDXXGHIGLGVK 512
            P LND V+ ++PVQKQTRAGQRTRFKAFV IGD  GH+GLG+K
Sbjct: 73  -PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIK 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,806
Number of Sequences: 5004
Number of extensions: 32406
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)