Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B04
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0756 + 5819367-5820038,5820847-5821005                          131   9e-31
03_06_0386 + 33555682-33556344,33557138-33557299                      129   3e-30
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     70   2e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    37   0.019

>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  131 bits (316), Expect = 9e-31
 Identities = 63/101 (62%), Positives = 73/101 (72%)
 Frame = +1

Query: 514 CSKEVATAIRGAIILANXSVSXVXTGXXGNXIGKPXTVPCXVTGKCGSVTVRLIPXPXGT 693
           C+KEVATAIRGAIILA  SV  V  G  GN IGKP TVPC VTGKCGSVTVR++P P G+
Sbjct: 129 CAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGS 188

Query: 694 GIVSAXVPKKLLXMAGVQDXYTSAXGSXWXLGKFXXXHICC 816
           GIV+A VPKK+L  AG++D +TS+ GS   LG F      C
Sbjct: 189 GIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDC 229



 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
 Frame = +3

Query: 210 RGPGRGXGXCKEDXKEWVPVTKLXRLVXSRKNRXTXRAFTVFYLPINXIRDH*FLSSX-P 386
           RG   G    +++ ++WVPVTKL RLV   K           YL    +++H  +    P
Sbjct: 31  RGGRGGRRGPRQEEEKWVPVTKLGRLVKENK----IHKIEEIYLHSLPVKEHQIVEQLVP 86

Query: 387 SLNDXVLXIMPVQKQTRAGQRTRFKAFVAIGDXXGHIGLGVK 512
            L D V+ I PVQKQTRAGQRTRFKAFV +GD  GH+GLGVK
Sbjct: 87  GLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVK 128


>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  129 bits (312), Expect = 3e-30
 Identities = 62/101 (61%), Positives = 73/101 (72%)
 Frame = +1

Query: 514 CSKEVATAIRGAIILANXSVSXVXTGXXGNXIGKPXTVPCXVTGKCGSVTVRLIPXPXGT 693
           C+KEVATAIRGAIILA  SV  V  G  GN IG+P TVPC VTGKCGSVTVR++P P G+
Sbjct: 126 CAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGS 185

Query: 694 GIVSAXVPKKLLXMAGVQDXYTSAXGSXWXLGKFXXXHICC 816
           GIV+A VPKK+L  AG++D +TS+ GS   LG F      C
Sbjct: 186 GIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDC 226



 Score = 91.5 bits (217), Expect = 9e-19
 Identities = 51/105 (48%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
 Frame = +3

Query: 201 GXXRGPGRGXGXCKEDXKEWVPVTKLXRLVXSRKNRXTXRAFTVFYLPINXIRDH*FLSS 380
           G  RG  RG    +++ ++WVPVTKL RLV  ++ R +       YL    +++H  + +
Sbjct: 28  GGRRGGRRGP---RQEEEKWVPVTKLGRLV--KEGRFS--KIEEIYLHSLPVKEHQIVET 80

Query: 381 -XPSLNDXVLXIMPVQKQTRAGQRTRFKAFVAIGDXXGHIGLGVK 512
             P L D V+ I PVQKQTRAGQRTRFKAFV +GD  GH+GLGVK
Sbjct: 81  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVK 125


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 41/94 (43%), Positives = 55/94 (58%)
 Frame = +1

Query: 514 CSKEVATAIRGAIILANXSVSXVXTGXXGNXIGKPXTVPCXVTGKCGSVTVRLIPXPXGT 693
           C+K  AT + GAIILA    +   T    +   KP TV C V  K GSVTVR++  P G+
Sbjct: 18  CAK--ATTMSGAIILAMFRCAEGATRETISR--KPHTVSCKVADKYGSVTVRMMLPPMGS 73

Query: 694 GIVSAXVPKKLLXMAGVQDXYTSAXGSXWXLGKF 795
            +V+  VPKK+L  AG++D +TS+ GS   L  F
Sbjct: 74  SVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 393 NDXVLXIMPVQKQTRAGQRTRFKAFVAIGDXXGHIGLGV 509
           ++ V+ +  V K  + G++  F+A V +GD  GH+G+GV
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGV 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,571
Number of Sequences: 37544
Number of extensions: 255153
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)