Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B04
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   129   2e-30

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  129 bits (312), Expect = 2e-30
 Identities = 64/94 (68%), Positives = 69/94 (73%)
 Frame = +1

Query: 514 CSKEVATAIRGAIILANXSVSXVXTGXXGNXIGKPXTVPCXVTGKCGSVTVRLIPXPXGT 693
           CSKEVATAIRGAI+ A  +V  V  G  GN IG P TVPC VTGKC SV VRLIP P GT
Sbjct: 139 CSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGT 198

Query: 694 GIVSAXVPKKLLXMAGVQDXYTSAXGSXWXLGKF 795
           GIVSA VPKKLL MAG++D YT+A GS   LG F
Sbjct: 199 GIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNF 232



 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 55/104 (52%), Positives = 59/104 (56%)
 Frame = +3

Query: 201 GXXRGPGRGXGXCKEDXKEWVPVTKLXRLVXSRKNRXTXRAFTVFYLPINXIRDH*FLSS 380
           G   G G   G   E   EW PVTKL RLV  +K   T     +  LPI        L S
Sbjct: 38  GGRGGRGGRAGRGGEKETEWTPVTKLGRLVKEKKIT-TLEEIYLNSLPIKEFEIIDALCS 96

Query: 381 XPSLNDXVLXIMPVQKQTRAGQRTRFKAFVAIGDXXGHIGLGVK 512
             +L D VL I PVQKQT AGQRTRFKAFVAIGD  GH+GLGVK
Sbjct: 97  --NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVK 138



 Score = 31.5 bits (68), Expect = 0.87
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 782 TLGNFXXXTYAAIXXXYAYLXP 847
           TLGNF   TYAA+   Y+YL P
Sbjct: 228 TLGNFAKATYAALQRTYSYLTP 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,495
Number of Sequences: 27780
Number of extensions: 202274
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)