Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_B03
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0206 + 41990251-41992032,41992131-41992361 30 2.1
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 30 2.8
06_01_0777 + 5811078-5811425 29 6.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 23 6.9
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 8.7
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086... 28 8.7
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 28 8.7
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +1
Query: 148 YWEYE-EGYPISGHFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREI 309
+++++ EG P+ S+R R W++Q+GG +++G D L +NR+
Sbjct: 215 FYQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQY 272
Query: 310 FNDDRGKLTGQA 345
N D+ L+ QA
Sbjct: 273 VNMDKTWLSKQA 284
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +1
Query: 232 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR--VLGPAGDSTNYGGRLD 405
GGG G G +G GY + RG + G + G R V G GD NYGG
Sbjct: 149 GGGGYSGQGTYGGGGGYGGGGYGGQDAYGGRG-VGGYSEGGRGYVGGGYGDGNNYGGYNT 207
Query: 406 WANKNAEAAIDINRQIGGRSGMTATGSG 489
N+E G G + G+G
Sbjct: 208 SGGYNSEGGRGGYSVFEGGHGYGSGGTG 235
>06_01_0777 + 5811078-5811425
Length = 115
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -3
Query: 869 GGGGXGGXXXGXXEFNCFIKNTSKVEYCSYIYLLTLSKXFITKIYNFNYNHSK 711
GGGG GG G F+KN +K ++ ++ LL + + + H +
Sbjct: 6 GGGGGGGGSAGSRRPLGFLKNAAKHKH-GFVQLLLMGSVLMMSLRTLGQKHRR 57
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.4 bits (48), Expect(2) = 6.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 826 NSXXPXXXPPXPPPP 870
N P PP PPPP
Sbjct: 596 NCLVPSPPPPPPPPP 610
Score = 23.4 bits (48), Expect(2) = 6.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 850 PPXPPPPP 873
PP PPPPP
Sbjct: 618 PPPPPPPP 625
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 379 STNYGGRLDWANKNAEAAIDINRQI 453
S+ +GG L W N + E+ +D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>03_05_0558 -
25606718-25606724,25606918-25606995,25608552-25608665,
25608755-25609266
Length = 236
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -1
Query: 574 RRRPVFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPHSYWPSLDV 395
+R VF D P R L G C+C D Q+C R + + ++Y LDV
Sbjct: 135 QRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEYNYVALLDV 189
Query: 394 HRSLYCPLQ 368
+ YC Q
Sbjct: 190 PKQNYCEYQ 198
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 180 ANWISFFVLPINFCVDTHQDRGEEI 106
A W F LP + +D H DR E++
Sbjct: 69 ALWAHFHRLPARYALDVHADRAEDV 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,169,912
Number of Sequences: 37544
Number of extensions: 556246
Number of successful extensions: 4212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3393
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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