Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B02
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   5.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.9  

>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +1

Query: 637 TQXPRPXEXXXQXPPXXXFHAXTHPXPPXXXLSPRRPPXWXP--XHVPKP 780
           TQ   P       PP   FH   +P PP    SP  P    P   H P P
Sbjct: 166 TQHHHPHTRPPHHPPHPHFHNNNYP-PPYCFQSPVSPGATVPLQHHSPYP 214


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 119 PPKKPPHYFWNSSEAERPXPPXYQTKNESXQTXRXG 12
           PP  PP  F   S+   P PP Y  K ++    + G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,332
Number of Sequences: 5004
Number of extensions: 23233
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)