Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_B01
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.13 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.76 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   1.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 671 TPPPXXPXXRXPPXPPXPXPTPSP 742
           +PPP  P    P   P P P P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 25.8 bits (54), Expect(2) = 0.13
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 674 PPPXXPXXRXPPXPPXPXPTPS 739
           PPP       PP PP P P  S
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVS 786



 Score = 24.6 bits (51), Expect(2) = 0.13
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 524 APQPX*XPXDSPXXXPPPPXXXPP 595
           AP P   P  +P    PPP   PP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 472  PPQXPGAXASPXPXGSLGXPTXLXPXRLPXXPXPT 576
            PP  P + A P P  S+G P    P   P  P P+
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
 Frame = +2

Query: 545  PXDSPXXXPP---PPXXXPPKTRXHSGXT-IXQAXXXXXXXXXXXXTPPPXXPXXRXPPX 712
            P  +P   PP   P    PP     SG   + +              PP   P    PP 
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 713  PPX----PXPTPS 739
            PP     P PTPS
Sbjct: 1211 PPPSTAPPVPTPS 1223


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 674  PPPXXPXXRXPPXPPXPXPTPSPXS 748
            PPP  P    P  PP   P P P S
Sbjct: 1716 PPPSAPPM--PAGPPSAPPPPLPAS 1738



 Score = 23.0 bits (47), Expect(2) = 1.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 527  PQPX*XPXDSPXXXPPPPXXXPP 595
            PQ    P  S    PPPP   PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPP 1716


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
 Frame = +2

Query: 569 PPPPXXXPPKTRXHSGXTIXQAXXXXXXXXXXXXTPPPXXPXXRXP--PXPPXPXPTPSP 742
           PPPP   PP     +                    PP   P    P    PP P PT  P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248

Query: 743 XS 748
            S
Sbjct: 249 QS 250



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/61 (29%), Positives = 22/61 (36%)
 Frame = +2

Query: 557 PXXXPPPPXXXPPKTRXHSGXTIXQAXXXXXXXXXXXXTPPPXXPXXRXPPXPPXPXPTP 736
           P   PPPP   PP++   S   +  +             PPP  P    PP PP    T 
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPM-PSRNVNNLGSQVNIPPPPATP--SQPPRPPTNASTR 292

Query: 737 S 739
           S
Sbjct: 293 S 293


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 674 PPPXXPXXRXPPXPPXPXPTP 736
           PPP  P    PP  P P P P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 484 PGAXASPXPXGSLGXPTXLXPXRLPXXPXPTP 579
           P A A P P   L  PT   P   P  P P+P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPR--PSIPPPSP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,848
Number of Sequences: 5004
Number of extensions: 24108
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)