Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A24
         (980 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    31   1.7  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    31   1.7  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   8.8  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   8.8  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   8.8  

>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
          Length = 1262

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +2

Query: 488  PGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPDRTIKIPXRFPPWXAPSLRSP---X 658
            P T K+      S+   P+  +++N+ S  R R P R +K P +   +      +P    
Sbjct: 1170 PKTPKQEFVTSKSVPMTPIFSNNENK-SPSRARMPSRVLKTPRQVKTFQEEDDEAPKRST 1228

Query: 659  FRXLXALXAYPVPPXPT 709
             R L  L A P+P  PT
Sbjct: 1229 TRQLKPLVAPPIPATPT 1245


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
            protein.
          Length = 1262

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +2

Query: 488  PGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPDRTIKIPXRFPPWXAPSLRSP---X 658
            P T K+      S+   P+  +++N+ S  R R P R +K P +   +      +P    
Sbjct: 1170 PKTPKQEFVTSKSVPMTPIFSNNENK-SPSRARMPSRVLKTPRQVKTFQEEDDEAPKRST 1228

Query: 659  FRXLXALXAYPVPPXPT 709
             R L  L A P+P  PT
Sbjct: 1229 TRQLKPLVAPPIPATPT 1245


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 468 SHVLSCVIXLILWITVLPPLSELIPLAA 385
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 468 SHVLSCVIXLILWITVLPPLSELIPLAA 385
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 468 SHVLSCVIXLILWITVLPPLSELIPLAA 385
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,550
Number of Sequences: 27780
Number of extensions: 302364
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)