Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A18
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    31   0.30 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.69 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.8  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   6.4  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   8.5  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 428 FLHVGYVPQLLVWPNVHGSSASTQTSLLRHP 336
           F   GY+P ++ WPN    SA+T + + R+P
Sbjct: 117 FQQQGYIP-VITWPNTDSPSATTSSPISRNP 146


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +3

Query: 513  ISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQ 692
            I + P +  P+  P +  L        A P   VPP      + PP+ +  A+ PP+ V 
Sbjct: 978  ILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP 1037

Query: 693  QAEDP 707
                P
Sbjct: 1038 STAPP 1042


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 630  HQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 719
            H V  PP+  Q A  P M       PPM V
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV 1714


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 355 LRC*GILYLCTYARILSIHRRSILWRKEEQQSSNPYLS 242
           + C  + +   YA+ L IHR S L+    + + N Y S
Sbjct: 175 IHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCS 212


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 600 PHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPME 716
           P    PP        PPM+ QQ   PP   QQA  PP++
Sbjct: 211 PQQNYPPAASSSA--PPMQYQQTAYPP---QQAPYPPVQ 244


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = -3

Query: 445 FEQGTSSCM*DMCRSCLCGQTCTDLRQARRLRC*GILYLCTYARILSIHRRSILWRKEEQ 266
           FE GT +    +  S L   T     +  ++ C  + YLC YA+ L+ H    L+   + 
Sbjct: 433 FEGGTYADFTIIAISLLVQYTKDYHSEIAQMLCCSLCYLCLYAQNLNSHSSQSLFELFQS 492

Query: 265 QSSNPYLSCDKIPLRRNVNFQIQYFNNLLLF 173
            S   +L  + +   + + + I   NN + +
Sbjct: 493 ASYPGFLISNDVN-HKILKYVIGAINNAIQY 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,665
Number of Sequences: 5004
Number of extensions: 64205
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)