Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A16
(966 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 3.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 3.7
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 5.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 5.0
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 6.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.5
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 6.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.5
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 6.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 6.5
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 28 8.7
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 818 PHRPXAPXXRACXSTXPPGSXPXPPXPLSPXPXPXXTSNP 937
P P P C T PP P P P P P +P
Sbjct: 128 PGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDP 167
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 818 PHRPXAPXXRACXSTXPPGSXPXPPXPLSPXPXPXXTSNP 937
P P P C T PP P P P P P +P
Sbjct: 123 PGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDP 162
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 818 PHRPXAPXXRACXSTXPPGSXPXPPXPLSPXPXPXXTSNP 937
P P P C T PP P P P P P +P
Sbjct: 123 PGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDP 162
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 848 ACXSTXPPGSXPXPPXPLSPXPXPXXTSNPXXXPXLHP 961
+C PP P PP P SP P P P P
Sbjct: 79 SCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAP 116
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 851 CXSTXPPGSXPXPPXPLSPXPXPXXTSNPXXXPXLHPP 964
C S PP P PP +P P P P P PP
Sbjct: 22 CCSMGPPPCPPPPPPMCAPPPLPCPPP-PICPPQFCPP 58
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 823 PPXRPXXPGLLXHXPPRFXPPXP*XP 900
PP P PG+ P F PP P P
Sbjct: 1252 PPTTPTYPGMTPRPGPNFGPPGPVYP 1277
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 823 PPXRPXXPGLLXHXPPRFXPPXP*XP 900
PP P PG+ P F PP P P
Sbjct: 1252 PPTTPTYPGMTPRPGPNFGPPGPVYP 1277
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Frame = +2
Query: 812 FXPHRPXAPXXRACXSTXPP--GSXPXPPXPLS-------PXPXPXXTSNPXXXPXLHPP 964
+ P P P PP G P PP P S P P P T P P + PP
Sbjct: 260 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 818 PHRPXAPXXRACXSTXPPGSXPXPPXPLSPXPXPXXTSNP 937
P P P C T PP P P P P P +P
Sbjct: 130 PGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDP 169
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Frame = +2
Query: 812 FXPHRPXAPXXRACXSTXPP--GSXPXPPXPLS-------PXPXPXXTSNPXXXPXLHPP 964
+ P P P PP G P PP P S P P P T P P + PP
Sbjct: 270 YPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 866 PP--GSXPXPPXPLSPXPXPXXTSNPXXXPXLHPP 964
PP GS PP P + P P T +P P PP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 866 PP--GSXPXPPXPLSPXPXPXXTSNPXXXPXLHPP 964
PP GS PP P + P P T +P P PP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +2
Query: 866 PP--GSXPXPPXPLSPXPXPXXTSNPXXXPXLHPP 964
PP GS PP P + P P T +P P PP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 823 PPXRPXXPGLLXHXPPRFXPPXP*XP 900
PP P PG+ P F PP P P
Sbjct: 1252 PPTTPTYPGMTPRPGPNFGPPGPVYP 1277
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +2
Query: 818 PHRPXAPXXRACXSTXPPGSXPXPPXPLSPXPXPXXTSNP 937
P P P C T PP P P P P P +P
Sbjct: 130 PGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDP 169
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +2
Query: 818 PHRPXAPXXRACXSTXPPGSXPXPPXPLSPXPXP 919
P P P + C T PP P P P P P
Sbjct: 116 PGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQP 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,108,908
Number of Sequences: 27780
Number of extensions: 125501
Number of successful extensions: 801
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -