Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A13
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 102 PRERNSVSPWVSQWEQ*STAPTTQGAKNLYVIAVQGIKGRLNRLPAA 242
           P++ ++ +P VSQ     TAP  Q     YV    G + + + +P A
Sbjct: 60  PKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTA 106


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 193 TYRFFAPCVVGAVDY 149
           T RF+  CVV A DY
Sbjct: 467 TTRFYTACVVEAFDY 481


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 681 SPPXPXXXPPPP 716
           +PP P   PPPP
Sbjct: 337 TPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 739 PPXXXPPPXPP 771
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +3

Query: 132 VSQWEQ*STAPTTQGAKNL---YVIAVQGIKG 218
           V Q EQ   AP T G KN+   +++   GI G
Sbjct: 805 VQQCEQLEKAPNTLGLKNMAGVFIVVGVGIIG 836


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 490 GGRGAPXNFWXPLVXW 443
           GG G P N   PL+ W
Sbjct: 148 GGNGGPRNGLLPLLVW 163


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +3

Query: 714 PPXXXXXPPPXXXTXXXPPXTXXPPPXXXXPPXXXXPXPPP 836
           P      P P        P    PP     PP    P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 689 PXXXXPPPXPXPXXXPPPPXXXXXPPPXXXXP 784
           P    P P P P   P  P     P P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 490 GGRGAPXNFWXPLVXW 443
           GG G P N   PL+ W
Sbjct: 148 GGNGGPRNGLLPLLVW 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,518
Number of Sequences: 438
Number of extensions: 8923
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)