Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A12
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    68   2e-12
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    59   7e-10
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   4.9  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   6.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.4  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   6.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   8.5  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 39/105 (37%), Positives = 56/105 (53%)
 Frame = +2

Query: 491 GRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMM 670
           G D+  EEE+ +  + A   E +E    ++ +     + KGIP+FW    +NV  LSEM+
Sbjct: 124 GADEPTEEEIKKG-EAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSLSEMI 182

Query: 671 QEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTIQYLLKS 805
              DE  L  L DI++   E P  F LEF FA N +FT + L K+
Sbjct: 183 TPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKT 226


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +2

Query: 599 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNE 775
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220

Query: 776 YFTIQYLLKS 805
           YFT + L K+
Sbjct: 221 YFTNKILTKT 230


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 780 KYSFGAK*-NSKVKLMGSSCICTLISCKH 697
           KYSF +K   SK K    SC   LISC H
Sbjct: 361 KYSFSSKNVQSKEKSKIMSCFTLLISCAH 389


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 482 STHGRDDTEEEELARAVQNAAITEGEEKK 568
           S  G  D+EE+E   A +NA   EG+++K
Sbjct: 223 SAAGSSDSEEDEEEIAKKNAFFAEGDKEK 251


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 533 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 619
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 135 ERSTVPIFNISLSPPSKFSEKKDG 64
           ERS  P  ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 209  HLLKSGVTRNEMIAAITNRLHAEAMASLP 295
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,990
Number of Sequences: 5004
Number of extensions: 70407
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)