Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A12
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 69 7e-12
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 66 3e-11
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 66 5e-11
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 62 6e-10
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 51 1e-06
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 46 5e-05
01_01_0723 + 5651593-5651751,5651896-5651957,5652130-5652170,565... 29 6.7
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 29 6.7
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 68.5 bits (160), Expect = 7e-12
Identities = 34/83 (40%), Positives = 47/83 (56%)
Frame = +2
Query: 557 EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP 736
+E + A E D + KG+PDFW + +LSE +QE DEP LK L+DIK +DP
Sbjct: 116 DEPASENAAEGK-DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDP 174
Query: 737 ISFTLEFYFAPNEYFTIQYLLKS 805
F L+F+F N +F L K+
Sbjct: 175 KGFKLDFFFDTNPFFKNSVLTKT 197
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 269 HAEAMASLPPNVRRRIRALRTLQ 337
H + + +L PNVR+R+ LR +Q
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQ 69
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 66.5 bits (155), Expect = 3e-11
Identities = 32/73 (43%), Positives = 41/73 (56%)
Frame = +2
Query: 587 PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFA 766
P KG+P+FW N +N +LSE +QE DE LK L+DIK +P F LEFYF
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFD 181
Query: 767 PNEYFTIQYLLKS 805
N +F L K+
Sbjct: 182 TNPFFKNSVLTKT 194
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 65.7 bits (153), Expect = 5e-11
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +2
Query: 590 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAP 769
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F EF+F
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYT 261
Query: 770 NEYFTIQYLLKS 805
N +F Q L K+
Sbjct: 262 NPFFKNQVLTKT 273
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 62.1 bits (144), Expect = 6e-10
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = +2
Query: 608 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTI 787
KG+PDFW +N +L+E + E DE LK L+DIK +DP F EF+F N +F
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 788 QYLLKS 805
Q L K+
Sbjct: 163 QVLTKT 168
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 51.2 bits (117), Expect = 1e-06
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 605 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 781
+K IPDFW F + ML E++ E D+ I K L+ I V ED S +++ F+PN YF
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131
Query: 782 TIQYLLKS 805
L K+
Sbjct: 132 EDTKLTKT 139
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 605 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 781
++ IPDFW F + +LSE++ E D+ + K L+ + V +D S +++ F+ N YF
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136
Query: 782 TIQYLLKS 805
+ L K+
Sbjct: 137 EDKELTKT 144
>01_01_0723 +
5651593-5651751,5651896-5651957,5652130-5652170,
5654105-5654352
Length = 169
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 362 GLNVDKLLXEEFSRRGFADEHSGVGTP 282
G++ LL FS RGFAD+H+ +G P
Sbjct: 118 GVDQPPLLRHNFSTRGFADDHA-LGAP 143
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 536 FVPPELTLLLQCHHAHGLRHSSSLG 462
F P TLLL CHHAH + ++ G
Sbjct: 7 FFPLLATLLLLCHHAHAVCEPATCG 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,773,917
Number of Sequences: 37544
Number of extensions: 448734
Number of successful extensions: 1048
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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