Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A12
(909 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 72 5e-13
Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of... 50 2e-06
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 30 2.0
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 4.6
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z73974-1|CAA98270.2| 349|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 72.1 bits (169), Expect = 5e-13
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = +2
Query: 596 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 775
DP+ KGI DFW R +++E ++EHD PIL L D+ +DP F +EF+FA N
Sbjct: 107 DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNP 166
Query: 776 YFTIQYLLKS 805
YF Q L K+
Sbjct: 167 YFKNQVLTKT 176
Score = 35.9 bits (79), Expect = 0.040
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 784 NTVLTKEYLMKCKPDEXSPLXFEGPEIYSCXG 879
N VLTK YL+ PD +PL F+GP + G
Sbjct: 170 NQVLTKTYLLGFDPDAEAPLQFDGPHVIRAVG 201
>Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical
protein C27B7.1b protein.
Length = 313
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 614 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTIQ 790
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFT +
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 791 YLLKS 805
+ KS
Sbjct: 137 VITKS 141
>Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical
protein C27B7.1a protein.
Length = 312
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 614 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTIQ 790
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFT +
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 791 YLLKS 805
+ KS
Sbjct: 137 VITKS 141
>AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of
presenilin 2 protein.
Length = 312
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 614 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTIQ 790
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFT +
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 791 YLLKS 805
+ KS
Sbjct: 137 VITKS 141
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 467 MMMNVSTHGRDDTEE--EELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIF 640
+MMN+ RD +E E ++NA + E +K+ ++ + + + +P +
Sbjct: 39 LMMNM-LEDRDKLQEQLENYKVQLENAGLRTKEVEKERDMMKRQFEVHTQNLPQELQTMT 97
Query: 641 RNVSMLSEMMQEHDEPILK 697
R + +L E + E DE I++
Sbjct: 98 RELCLLKEQLLEKDEEIVE 116
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 467 MMMNVSTHGRDDTEE--EELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIF 640
+MMN+ RD +E E ++NA + E +K+ ++ + + + +P +
Sbjct: 39 LMMNM-LEDRDKLQEQLENYKVQLENAGLRTKEVEKERDMMKRQFEVHTQNLPQELQTMT 97
Query: 641 RNVSMLSEMMQEHDEPILK 697
R + +L E + E DE I++
Sbjct: 98 RELCLLKEQLLEKDEEIVE 116
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 506 EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 676
+EE+ QNA + T E++ + + N + +P IF V + + +
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158
Query: 677 HDEPILKCLQDIKVQMHEDPIS 742
+ P+L L ++V H+DP S
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDPTS 1180
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 491 GRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 598
GRD+ EE LA+ ++ A GE+++ + EP D
Sbjct: 8 GRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical
protein T22G5.5 protein.
Length = 512
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 50 DRVTSPSFFSENFDGGESEILNMGTVERSGDDH 148
DR T +++ + G ESE++N+G+ G H
Sbjct: 117 DRYTDDHGWTQKYTGTESEVINLGSYNYLGFSH 149
>Z73974-1|CAA98270.2| 349|Caenorhabditis elegans Hypothetical
protein F29F11.3 protein.
Length = 349
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 477 FIIIRFICDHSQ*ELAFHKEACKVFHICIRV 385
F++IR +CD S+ ELA + C + CI +
Sbjct: 237 FMLIRPLCDISKKELAVYNYLCDIDKHCIHI 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,768,175
Number of Sequences: 27780
Number of extensions: 399590
Number of successful extensions: 1095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -