Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A11
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...   157   3e-39
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   3.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.3  

>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score =  157 bits (380), Expect = 3e-39
 Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 2/178 (1%)
 Frame = +3

Query: 228 LRFCFQWYTRHV--IWIYLQLMCPRYNTVMKLVFIFTSYATIYLMYVKFKATYDHNHDTF 401
           L F   + TR++   W Y  L    Y  +M++VFI +     YLM +  + TYD   DTF
Sbjct: 38  LLFLLVYVTRYLNLFWRYKSL----YYFLMRIVFIASESYICYLMLMTLRPTYDKRLDTF 93

Query: 402 RIEFLLIPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTREAESITSHYLF 581
           R E++L    +LAL+    +T+  +LWTFSI+LESVAILPQLF++ ++ E ES+T+HYLF
Sbjct: 94  RTEYILGGCAVLALIYPTSYTISNILWTFSIWLESVAILPQLFMLQRSGETESLTAHYLF 153

Query: 582 ALXSYRALYLLNWVYRYVVESHYELIAIISGVVQTILYCDFFYLYITKVLKGKXLQLP 755
           A+  YR LY+ +W+YR  V      +AI++G++QT+LY DF  +Y   VL+GK  +LP
Sbjct: 154 AMCLYRGLYIPHWIYRIAVHKKVIGVAILAGIIQTVLYGDFAVVYRRTVLQGKKFRLP 211



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +2

Query: 122 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVS 292
           M  F  LGD               KS++C+G+S KS +LF +VY TRYL+L   + S
Sbjct: 1   MTFFSALGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKS 57


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 800 VTPKTFKQILSKNLXWQL*XLSLQHFRNVKVKEITVQ 690
           +  KT+ Q   KN  W+L  + +Q   +VK ++I  Q
Sbjct: 397 IVKKTYPQTKKKNRNWRLKTIGMQKAEDVKKQDIERQ 433


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 333 SYATIYLMYVKFKATYDHNHD-TFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYL 500
           SYA+I++ +   + +YD  +D  + I   LI  FI   L+    TV   L  FS+++
Sbjct: 164 SYASIFIPWFNIQNSYDDPNDFNYAIGLYLICWFIFTFLV-LLCTVRSTLAFFSLFM 219


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 618 WVYRYVVESHYELIAIISGVVQTILYCDFFYLYITKVL 731
           W+Y Y   +HY   A++  +VQ         L++ +++
Sbjct: 469 WLYVYACFAHYFSFALVLALVQQFAKIQTILLFVIEII 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,720
Number of Sequences: 5004
Number of extensions: 73345
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)