Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A11
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   6.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.7  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 327 FTSYATIYLMYVKFKATY 380
           F SY T++ +YV+  AT+
Sbjct: 127 FISYGTLFFIYVQPSATF 144


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 327 FTSYATIYLMYVKFKATY 380
           F SY T++ +YV   AT+
Sbjct: 128 FISYGTLFFIYVHPSATF 145


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 660 LSTHSETPQHNGKPSSRGTELYMNXKQTDNE 568
           +S+H E P H    SS+  E  MN   T  E
Sbjct: 55  ISSHDELPGHINCDSSKFEEDLMNKLPTTPE 85


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -3

Query: 395 VMVVIIGGLKLDIHQINSCIGGKDEHQLHDSVIXGTHEL 279
           +M  ++G + + +  I+ C G  D  +L+D ++   ++L
Sbjct: 1   MMKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYNKL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,620
Number of Sequences: 438
Number of extensions: 5401
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)