Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A10
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    40   5e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.009
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    30   0.58 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.4  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 22/54 (40%), Positives = 23/54 (42%)
 Frame = -3

Query: 921 GRRGXGEXGXXGGWXAXXAXXKGVGGXXGGGXGGGXGXSXGGXGGEXVRXCGXG 760
           G RG G  G  GG         G GG  GG  GGG G + GG GG      G G
Sbjct: 6   GSRG-GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58



 Score = 33.1 bits (72), Expect = 0.062
 Identities = 25/61 (40%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 960 PGXRGX*XEAXXGGRRGXGEXGXXGGWXAXXAXXKGV-GGXXGGGXGG--GXGXSXGGXG 790
           PG RG       GG RG G  G  GG         G  GG  GG  GG  G G + GG G
Sbjct: 5   PGSRGG-----RGGSRG-GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58

Query: 789 G 787
           G
Sbjct: 59  G 59



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = -3

Query: 984 GGEGXVXGP-GXRGX*XEAXXGGRRGXGEXGXXGGWXAXXAXXKGVGGXXGGGXGG 820
           GG G   G  G  G       GG RG G  G  GG         G  G  GG  GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRG-GARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 26/66 (39%), Positives = 26/66 (39%)
 Frame = -3

Query: 984 GGEGXVXGPGXRGX*XEAXXGGRRGXGEXGXXGGWXAXXAXXKGVGGXXGGGXGGGXGXS 805
           GG G   G G  G       GG  G G  G  GG         G GG  GG  GGG G  
Sbjct: 205 GGFGGFGGFGGEGH-HHGGHGGF-GGGPGGFEGGPGGFGGGPGGFGGGLGG-FGGGPGGF 261

Query: 804 XGGXGG 787
            GG GG
Sbjct: 262 GGGPGG 267



 Score = 31.5 bits (68), Expect = 0.19
 Identities = 24/66 (36%), Positives = 25/66 (37%)
 Frame = -3

Query: 984 GGEGXVXGPGXRGX*XEAXXGGRRGXGEXGXXGGWXAXXAXXKGVGGXXGGGXGGGXGXS 805
           GG G   G G          GG  G  E G  G          G+GG  GGG  GG G  
Sbjct: 208 GGFGGFGGEGHHHG-GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF-GGGP-GGFGGG 264

Query: 804 XGGXGG 787
            GG GG
Sbjct: 265 PGGHGG 270


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 22/64 (34%), Positives = 23/64 (35%)
 Frame = -3

Query: 978 EGXVXGPGXRGX*XEAXXGGRRGXGEXGXXGGWXAXXAXXKGVGGXXGGGXGGGXGXSXG 799
           +G   GP  RG        G RG G  G  GG           GG  GG  GG  G   G
Sbjct: 128 KGARNGPAGRGG--RGGFRGGRG-GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184

Query: 798 GXGG 787
           G  G
Sbjct: 185 GSRG 188


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 884 PPXXPXSPXPRRPPXXASXHXPLXPGPXTXPSPPL 988
           PP  P +P  + PP   S    + P P   P PPL
Sbjct: 173 PPAQPAAPV-KSPPSAPSLPSAVPPMPPKVPPPPL 206


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +2

Query: 884 PPXXPXSPXPRRPPXXASXHXPLXPGP--XTXPSPP 985
           PP  P S  P R P  ++   P  P P   T  SPP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,700
Number of Sequences: 5004
Number of extensions: 21219
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)