Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A09
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 75 1e-14
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 45 1e-05
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 33 0.056
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 32 0.097
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 31 0.22
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 30 0.39
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 28 1.6
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.1
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 28 2.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.6
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.4
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 8.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 8.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 8.4
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +1
Query: 154 EKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 333
+K G + E+ RKESILDLS+Y ++ I+ F GGR+ GILKG+D L+NLVLD+
Sbjct: 5 QKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDV 64
Query: 334 TEFLRDPDD 360
E LR+P+D
Sbjct: 65 EEQLRNPED 73
Score = 46.4 bits (105), Expect = 6e-06
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +2
Query: 398 LVVCRGTSVVLICPMDGMEAIPNPFINQE 484
LVV RGT++VLI PMDG E IPNPF+ E
Sbjct: 85 LVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +1
Query: 220 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
DL KYL++ + V+ G R+ G+L+GYD LN+VL+++ E
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 33.1 bits (72), Expect = 0.056
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 217 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDD 360
LDL + L++ + VK G RE G L YD LN+VL + E + DD
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDD 59
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 32.3 bits (70), Expect = 0.097
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 217 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
+ L+ ++E+ ++V GR G LKG+D NL+L ++ E
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 223 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 345
L+K + K + ++ + G + GIL D +NL L+ T E++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV 49
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 223 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 342
+ K + ++ V RE AG L G+D +N+VL + TE+
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEY 50
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 310 LNLVLDNTTEFLRDPDDPYKLLDDT----RALXSCCLPRYISCFNMSNGWYGSNTKPFY 474
+N+V T F R D +K + ++ R + SC R+ +M YG+N K Y
Sbjct: 4 INIVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRY 62
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 218 NIDSFLLFSLLSPVTWLPFDFSPPSLDAMFVLQLSNFKSLPTLF 87
NI SFLL S+ + +++L D + P A N+ +L T+F
Sbjct: 2 NIRSFLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVF 45
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 310 LNLVLDNTTEFLRDPDDPYKLLDDT----RALXSCCLPRYISCFNMSNGWYGSNTKPFY 474
+N++ T F R D +K + ++ R + SC R+ +M YG+N K Y
Sbjct: 4 VNIIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRY 62
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 644 PXXGGVXGPPXPXKXXXGXXGPPPPP 721
P GG PP P PPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 355 DDPYKLLDDTRALXSCCLPRYISCFNM 435
DDP LL+ T+AL SC L NM
Sbjct: 901 DDPLYLLNTTKALRSCILSTEERASNM 927
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -3
Query: 266 PANFTRMLFSKYLLRSNIDSFLLFSLLSPVTWLPFDFSPPSLDAMFVLQLS 114
PA+F R+L + L++N+ L SLL+ + FD+ SLD +F ++ S
Sbjct: 538 PADF-RVLLTGTPLQNNLKE--LISLLAFILPHVFDYGLKSLDVIFTMKKS 585
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 227 LRSNIDSFLL-FSLLSPVTWLPFDFSPPSLDAMFVLQLSN 111
L +N D +L FS+L+ + +LP PPS D Q+SN
Sbjct: 927 LCANGDFYLAKFSILTLIEFLPSFAPPPSNDKQSTPQVSN 966
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 221 SNIDSFLLFSLLSPVTW 171
S +DSFL F L P+TW
Sbjct: 272 SGLDSFLNFPLYWPITW 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,550
Number of Sequences: 5004
Number of extensions: 42680
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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