Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A09
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 74 1e-13
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 47 2e-05
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 35 0.10
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 0.95
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 30 2.2
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 30 2.9
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 29 3.8
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 29 5.1
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 29 5.1
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 29 6.7
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 6.7
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007... 29 6.7
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 28 8.8
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988... 28 8.8
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Frame = +1
Query: 202 RKESILDLSKYLEKSIRVKFAGGREAA-------GILKGYDPLLNLVLDNTTEFLRDPDD 360
RKE++LDL+K+++K ++VK GGR+ + G LKGYD LLNLVLD EF R+ DD
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDD 63
Query: 361 PYKLLDDTRAL 393
P KL TR L
Sbjct: 64 PLKLSGKTRQL 74
Score = 39.5 bits (88), Expect = 0.004
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 398 LVVCRGTSVVLICPMDGMEAIPNPF 472
L+VCRGT+V+L+ P DG + I NPF
Sbjct: 76 LIVCRGTAVMLVSPTDGTDEIANPF 100
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 220 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
DL KY++K +++K R G L+G+D +NLV+DNT E
Sbjct: 9 DLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE 48
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 34.7 bits (76), Expect = 0.10
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 199 RRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
++ ++++ S L + VK R G L+G+D +NLV+DNT E
Sbjct: 16 KKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNTVE 62
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 0.95
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 653 GGVXGPPXPXKXXXGXXGPPPPP 721
GGV PP P + G GPP PP
Sbjct: 1180 GGVAPPPPPPRGHGGVGGPPTPP 1202
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 223 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 342
+ + + I V G +E G L G+D +N+VL++ TE+
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY 123
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 217 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 345
LDL + L++ I VK RE G L YD LN++L + E +
Sbjct: 20 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 63
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 118 NCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRV 255
N TN S++GGEK K NK+K+ K L+K +V
Sbjct: 447 NDMTNAVSEDGGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKV 492
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 223 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
L +++ I V GR G L+G+D N++LD + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 528 MPYLKIYSYQNYSYPSWLIKGFGIASIPS 442
+ +L I Y++ +YPSWL++G + ++ S
Sbjct: 776 LEHLSIRGYKSTTYPSWLLEGSQLENLES 804
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 115 DNCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIR 252
+NCN + ++ S+ DN KRR+E + D+ + +++ ++
Sbjct: 190 ENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLK 235
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 625 SPGXXXPXXGGGXXAPPPXKXXXXXXXAPPPP 720
+PG P GG PPP + APPPP
Sbjct: 253 APGTL-PNGSGGPPRPPPPQVPPPPPQAPPPP 283
>02_05_0577 -
30100084-30100251,30100474-30100548,30100631-30100755,
30101538-30101609,30102016-30102108,30102333-30102419,
30103049-30103135,30103448-30103522,30104142-30104238
Length = 292
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +1
Query: 145 EGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAG 267
+G +++K SQVTG+ E+ R++ ++ S YL+ + K +G
Sbjct: 146 QGADRTK-SQVTGNRTEELRRKKTVEGSHYLQDFEKCKKSG 185
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 MASKEGGEKSKGSQVTGDN-KEKRRKESILDLSKYLEKSIR 252
++ KE KG ++GD+ K+ RK S +DLSK L KS+R
Sbjct: 585 LSIKEFYRSKKG--LSGDSGKDGSRKSSDVDLSKNLPKSVR 623
>02_02_0405 +
9885202-9885415,9885515-9885861,9885941-9886516,
9886599-9887003
Length = 513
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 94 VGSDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRRKE 210
V S L N TN+A+ GE K + D KE+ +KE
Sbjct: 96 VSSALALSNAITNLAASVFGEHRKLEPMAPDTKERWKKE 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,986
Number of Sequences: 37544
Number of extensions: 383413
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -