Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A09
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 91 8e-19
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 51 1e-06
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 51 1e-06
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 37 0.017
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 32 0.49
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.65
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.65
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.65
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.85
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.85
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 30 2.0
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 6.0
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.0
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.0
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 28 7.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 7.9
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 28 7.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 7.9
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 91.5 bits (217), Expect = 8e-19
Identities = 39/66 (59%), Positives = 56/66 (84%)
Frame = +1
Query: 196 KRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL 375
KR+KES++DL+++L+K IRVKF GGREA+G+L+G+D LLN+VLD+ E+LRDP +P +
Sbjct: 7 KRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVG 66
Query: 376 DDTRAL 393
D+TR L
Sbjct: 67 DETRQL 72
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 398 LVVCRGTSVVLICPMDGMEAIPNPFINQE 484
L+V RGT++ ++ P DG+E I NPF QE
Sbjct: 74 LIVARGTAITVVSPADGLEQIANPFATQE 102
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 50.8 bits (116), Expect = 1e-06
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +1
Query: 220 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 351
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 50.8 bits (116), Expect = 1e-06
Identities = 18/44 (40%), Positives = 31/44 (70%)
Frame = +1
Query: 220 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD 351
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD 51
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 37.1 bits (82), Expect = 0.017
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 223 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
L Y+ + + V GR G+LKG+D L+NLV+++ E
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 216 YRFFPSLFFIISCYLAAF*LFTSFF--GCH 133
YR+ PS F I+ C AF +F +FF GCH
Sbjct: 131 YRYAPSSFGILICLTLAFIVFIAFFPEGCH 160
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P G P GG PP P GPPPPP
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 644 PXXGGVXGPPXPXKXXXGXXGPPPPP 721
P GG PP P GPPPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 628 PGXXXPXXGGGXXAPPPXKXXXXXXXAPPPPXXXXXXXXLXXXXXXXPPXXXXXPP 795
P P GG PPP PPPP + PP PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P G P G GPP P G PPPPP
Sbjct: 747 PPGGLPPISG---GPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P G P GG PP P GPPPPP
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 644 PXXGGVXGPPXPXKXXXGXXGPPPPP 721
P GG PP P GPPPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 628 PGXXXPXXGGGXXAPPPXKXXXXXXXAPPPPXXXXXXXXLXXXXXXXPPXXXXXPP 795
P P GG PPP PPPP + PP PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P G P G GPP P G PPPPP
Sbjct: 747 PPGGLPPISG---GPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P G P GG PP P GPPPPP
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 644 PXXGGVXGPPXPXKXXXGXXGPPPPP 721
P GG PP P GPPPPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 628 PGXXXPXXGGGXXAPPPXKXXXXXXXAPPPPXXXXXXXXLXXXXXXXPPXXXXXPP 795
P P GG PPP PPPP + PP PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P G P G GPP P G PPPPP
Sbjct: 330 PPGGLPPISG---GPPPPPPPPGGCPPPPPPP 358
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P P GG+ PP P G PPPPP
Sbjct: 322 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P P GG+ PP P G PPPPP
Sbjct: 332 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 217 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 339
+ L + L+K + V GR+ G L+ D NL+L++ E
Sbjct: 12 ISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 528 MPYLKIYSYQNYSYPSWLIKGFGIASIPSIGHIKT 424
MP+L Y+Y NYSY S L + +A++ ++T
Sbjct: 381 MPFLITYAYVNYSYVS-LAMSYDLATVQHADEVET 414
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 653 GGVXGPPXPXKXXXGXXGPPPPP 721
GG GPP P G PPPPP
Sbjct: 44 GGGFGPPPPPFGPVGYALPPPPP 66
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 223 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPD 357
+ K + I V +E G L G+D +N+VL++ E+ D
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAD 62
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPPPP 721
P P G PP P GPPPPP
Sbjct: 524 PMPGMAPLSTGAPTPPPPPPVGMANGGPPPPP 555
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPP 715
PRG GG GPP P K G PP
Sbjct: 628 PRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 626 PRGXXXPXXGGVXGPPXPXKXXXGXXGPPP 715
PRG GG GPP P K G PP
Sbjct: 628 PRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 145 EGGEKSKGSQVTGDNKEKR 201
EGGEK + S+VT D +E+R
Sbjct: 394 EGGEKRRTSKVTSDERERR 412
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 668 PPXPXKXXXGXXGPPPPP 721
PP P K G PPPPP
Sbjct: 125 PPPPRKSRAGGSSPPPPP 142
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 653 GGVXGPPXPXKXXXGXXGPPPP 718
GG GPP P + GPPPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPP 696
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 145 EGGEKSKGSQVTGDNKEKR 201
EGGEK + S+VT D +E+R
Sbjct: 394 EGGEKRRTSKVTSDERERR 412
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 653 GGVXGPPXPXKXXXGXXGPPPP 718
GG GPP P + GPPPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPP 696
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,743
Number of Sequences: 27780
Number of extensions: 287696
Number of successful extensions: 1280
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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