Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A05
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   141   1e-34
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   139   6e-34
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   2.2  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   8.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   8.7  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  141 bits (342), Expect = 1e-34
 Identities = 62/128 (48%), Positives = 88/128 (68%), Gaps = 2/128 (1%)
 Frame = +2

Query: 116 K*CLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 295
           K  L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  +I +RS++
Sbjct: 9   KVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRV 68

Query: 296 KPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 469
           KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R   R   +  FEE+Y+SGK+ 
Sbjct: 69  KPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSA 128

Query: 470 WFFQKLRF 493
           WFF  LRF
Sbjct: 129 WFFTPLRF 136


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  139 bits (336), Expect = 6e-34
 Identities = 60/128 (46%), Positives = 88/128 (68%), Gaps = 2/128 (1%)
 Frame = +2

Query: 116 K*CLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKI 295
           K  LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  +I KRS++
Sbjct: 9   KVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRV 68

Query: 296 KPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 469
           KPF+KV+NYNHLMPTRY ++    K   +     +P++R   +   +  FEE+Y++GK+ 
Sbjct: 69  KPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSA 128

Query: 470 WFFQKLRF 493
           WFF  LRF
Sbjct: 129 WFFTPLRF 136


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 263 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 397
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 394 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 293
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 SRITTKVPPTSHTGMPSSLVSTGT 239
           SR+ T +PP S + +P+  +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,726
Number of Sequences: 5004
Number of extensions: 46023
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)