Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A04
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 23/84 (27%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
 Frame = -1

Query: 838 GGXGXXXGXXXXXXXXXPGXGGXXKRGXXXXXXXXXGXXKGXXXXXXGXPXFXXXXP--F 665
           GG G   G          G GG    G         G   G      G P      P  F
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247

Query: 664 FSGDXXXGXGPXXXGXXXXGXGGP 593
             G    G GP   G    G GGP
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
 Frame = +2

Query: 827  PPPXPXXXPXXPXXXPXP-XPPXXXPXXXP 913
            PPP P   P  P   P P  PP   P   P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 826 PPXXPXXXXPXPXXXXXPXXPXXXXXXXPPPP 921
           PP  P    P P     P  P       PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 815 PXXXPPPXPXXXPXXPXXXPXPXPP 889
           P   PPP P      P   P P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,943
Number of Sequences: 5004
Number of extensions: 40179
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)