Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A03
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 193 3e-50
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 192 7e-50
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 191 9e-50
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 1.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.6
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 2.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 4.5
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 4.5
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 6.0
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 193 bits (470), Expect = 3e-50
Identities = 84/113 (74%), Positives = 96/113 (84%)
Frame = +3
Query: 75 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 254
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 255 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 413
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HR
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHR 113
Score = 179 bits (435), Expect = 5e-46
Identities = 82/120 (68%), Positives = 98/120 (81%)
Frame = +1
Query: 415 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 594
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 595 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 774
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +2
Query: 773 KAYXSLPRGKGIRLTIAEERDXR 841
K++ SLP+GKG++L+I EERD R
Sbjct: 233 KSWISLPKGKGVKLSITEERDRR 255
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 192 bits (467), Expect = 7e-50
Identities = 83/113 (73%), Positives = 96/113 (84%)
Frame = +3
Query: 75 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 254
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 255 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 413
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HR
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHR 113
Score = 179 bits (435), Expect = 5e-46
Identities = 82/120 (68%), Positives = 98/120 (81%)
Frame = +1
Query: 415 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 594
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 595 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 774
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +2
Query: 773 KAYXSLPRGKGIRLTIAEERDXR 841
K++ SLP+GKG++L+I EERD R
Sbjct: 233 KSWISLPKGKGVKLSITEERDRR 255
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 191 bits (466), Expect = 9e-50
Identities = 83/113 (73%), Positives = 96/113 (84%)
Frame = +3
Query: 75 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 254
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 255 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 413
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HR
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHR 113
Score = 180 bits (437), Expect = 3e-46
Identities = 82/120 (68%), Positives = 98/120 (81%)
Frame = +1
Query: 415 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 594
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 595 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 774
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGK 233
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +2
Query: 773 KAYXSLPRGKGIRLTIAEERDXR 841
K++ SLP+GKG++L+I EERD R
Sbjct: 233 KSWISLPKGKGVKLSITEERDRR 255
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 756 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 658
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 329 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 174
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = -3
Query: 804 PLPRGSEXYAFRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASR 625
P P+G+ + A H P GEG R V N + + +H+P+ S+
Sbjct: 269 PSPQGTTANSSSASISSLHNTTPDGEGKYR---SVQNGRALNYVSSFNSDSHSPKDYISQ 325
Query: 624 DHTQVPRLKLDEVHNLRS 571
+T P LK + + +
Sbjct: 326 SYTNEPGLKKESADSFNN 343
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 537 QSQRFHPVRHRNYED 581
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 595 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 699
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 504 WPHHPLPRPTYQSQR 548
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,981
Number of Sequences: 5004
Number of extensions: 76003
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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