Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A03
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   172   3e-43
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   4.3  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   4.3  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  172 bits (418), Expect = 3e-43
 Identities = 77/111 (69%), Positives = 91/111 (81%)
 Frame = +3

Query: 81  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 260
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 261 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 413
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HR
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHR 112



 Score =  167 bits (405), Expect = 1e-41
 Identities = 78/122 (63%), Positives = 93/122 (76%)
 Frame = +1

Query: 415 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 594
           I   EA +KLCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +
Sbjct: 113 IQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSV 172

Query: 595 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 774
           KFE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG K
Sbjct: 173 KFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNK 232

Query: 775 GV 780
            +
Sbjct: 233 AL 234



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +2

Query: 773 KAYXSLPRGKGIRLTIAEERDXRI 844
           KA  SLP G GIRL+IAEERD R+
Sbjct: 232 KALVSLPTGAGIRLSIAEERDKRM 255


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +3

Query: 624 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE 773
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHE 694



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
 Frame = +3

Query: 510 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACG-HHRVPRETSR 683
           HH      +  +  H P  H ++ ++G H          H     G  G HH  P     
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 684 LLRHCAHQGLHGTHLRHEVEQRVHNRQG 767
              H  H G HG H         H   G
Sbjct: 519 HGEHGTHHGHHGEHHHAPAHHGHHGEHG 546


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 612 LVYDHGRP*LGACGHHRVPRETSRLLRH 695
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 612 LVYDHGRP*LGACGHHRVPRETSRLLRH 695
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 510 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 593
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 649 VGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKG 777
           +GT +    H GS D++      GH        +F+ G G KG
Sbjct: 594 LGTALGPRVHGGSVDLLSELVRAGHKGRKTSKGIFVYGDGAKG 636


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,457
Number of Sequences: 27780
Number of extensions: 453870
Number of successful extensions: 1364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)