Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A02
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    29   0.74 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.98 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.2  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 561 KNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXP 659
           + + S+P   KP PD K P   SP   P +  P
Sbjct: 167 EQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEP 199


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 537  SAPPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXP 674
            SA P Q     P  P  + P P    P    P  +PP   P  S P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 537  SAPPX-QHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXP 674
            S PP  +     PS+P    P P  + P   +P  +PP   P G  P
Sbjct: 1048 STPPVPKSSSGAPSAPPPV-PAPSSEIPSIPAPSGAPPVPAPSGIPP 1093


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,728
Number of Sequences: 5004
Number of extensions: 27666
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)