Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_A02
(964 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 33 0.30
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.53
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 3.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 3.7
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 8.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 28 8.6
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 33.1 bits (72), Expect = 0.30
Identities = 28/102 (27%), Positives = 30/102 (29%)
Frame = -1
Query: 919 WGREGXSXVAXXKRGQAVSGGEXRGDWGENGRPXGW*XGVEVXTRNVXXYGGXSGGXRGX 740
WG G G GG RGDWG N G G N +GG +GG G
Sbjct: 78 WGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWG--GGGNNDGGWGGNNGGGGGG 135
Query: 739 XRPXLAXXXXXXXXXXXXXXRXGXXPGGXXRGGLXRGEXAXG 614
G GG GG RG G
Sbjct: 136 RGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGG 177
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +3
Query: 543 PPXQHHKNRPSSP--QXAKPXPDYKXPXAXSPLXSPPRXXPPGSXP 674
PP QHH P P + P +Y+ P P PP PP P
Sbjct: 79 PPGQHHPQHPGMPPMEWRPPGAEYQMPPGY-PAGYPPYGMPPRHHP 123
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +3
Query: 540 APPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXPXR 680
+PP + P P+ + P+ P P SPP PP P +
Sbjct: 320 SPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGK 366
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +3
Query: 537 SAPPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXPXR 680
S P + H+ P + ++ + P P SPP PP P +
Sbjct: 461 SPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSPPTGAPPK 508
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +3
Query: 540 APPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXPXR 680
+PP + P P+ + P+ P P SPP PP P +
Sbjct: 341 SPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGK 387
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +3
Query: 537 SAPPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXPXR 680
S P + H+ P + ++ + P P SPP PP P +
Sbjct: 482 SPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSPPTGAPPK 529
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +3
Query: 540 APPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXPXR 680
+PP + P P+ + P+ P P SPP PP P +
Sbjct: 326 SPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGK 372
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +3
Query: 537 SAPPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXPXR 680
S P + H+ P + ++ + P P SPP PP P +
Sbjct: 467 SPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSPPTGAPPK 514
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 543 PPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPP 662
P HH+ + +P + + P + S +PPR PP
Sbjct: 2353 PTSHHHQGQQQAPPQSSQQASQQAPTSDSGTSAPPRQAPP 2392
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 543 PPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXPP 662
P HH+ + +P + + P + S +PPR PP
Sbjct: 2353 PTSHHHQGQQQAPPQSSQQASQQAPTSDSGTSAPPRQAPP 2392
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Frame = -1
Query: 916 GREGXSXVAXXKRGQAVSGGEXRGDWGENGRPX------GW*XGVEVXTRNVXXYGGXSG 755
G++G S Q S G G WG + R GW G + N +GG G
Sbjct: 95 GQDGGSSAGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGW-GGQQGGNSNAGGWGGSQG 153
Query: 754 GXRG 743
G G
Sbjct: 154 GQNG 157
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = +3
Query: 471 SKRPXXRPAXVXXPRCWRXXIXSAPPXQHHKNRPSSPQXAKPXPDYKXPXA-XSPLXSPP 647
S P PA V + I S+ HH S+P P P P + +P PP
Sbjct: 119 SAPPVPPPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPP 178
Query: 648 RXXPPGS 668
P S
Sbjct: 179 AQQKPSS 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,664
Number of Sequences: 27780
Number of extensions: 190253
Number of successful extensions: 514
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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