Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_A02
         (964 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 471 SHVLSCVIALILWITVXPPLSELIPLAA 388
           S +LS V+ L+L   + PP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 483 VAFCSHVL-SCVIALILWITVXPPLSELIPL 394
           V+ CS +L S  +  +L   + PP S  IPL
Sbjct: 281 VSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 543 PPXQHHKNRPSSPQXAKPXPDYKXPXAXSPLXSPPRXXP 659
           P    H++ P +PQ   P    + P    P  +PP   P
Sbjct: 23  PQPSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 576 SPQXAKPXPDYKXPXAXSPLXSPPRXXPPGSXP 674
           SP  +   P    P   +P   PP   PPG+ P
Sbjct: 26  SPHQSPQAPQRGSPP--NPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,993
Number of Sequences: 438
Number of extensions: 2342
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)