Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P24
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    32   0.71 
08_01_0686 + 6049563-6050900                                           31   0.94 
03_05_0373 + 23581812-23583293                                         30   2.2  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   8.7  

>05_03_0415 -
           13661745-13664240,13664376-13664401,13665018-13665035,
           13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -3

Query: 449 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 291
           P  R SA T+    WP    L A+ +R L  AL+CC + S PS    L++C S
Sbjct: 99  PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147


>08_01_0686 + 6049563-6050900
          Length = 445

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 56  NCWTHSLCVAVRFCISSALSLSTVHHGRQVRSSLRLHRSGPRS 184
           NC T S+CV V+  +    SLSTV  G +  + L L+ S P S
Sbjct: 357 NC-TQSICVGVKMGLFGTESLSTVCIGEESGTMLTLYLSDPNS 398


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 482 DVQGGPCGAPRPCARCSASTVPKPPW 405
           D  GG   A    +RCSAST PK PW
Sbjct: 53  DGAGGYGSAASSPSRCSASTPPKSPW 78


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 467 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 345
           PC  P P  R  ++T  + PW    R R + W  L     C
Sbjct: 26  PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,491
Number of Sequences: 37544
Number of extensions: 290899
Number of successful extensions: 1201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)