Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P23
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    28   2.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.8  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   3.8  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   5.0  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.7  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 160 LYNKTNRYFKTRLLTVIEFKMCYLNIIFLTCALLVTSIAQNSSKDAIGFPEMEENPDLRN 339
           +Y+ TN   +TR +    FK C   I+F+        +   + ++AI   E   N DL  
Sbjct: 140 IYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVSEEFRNWDLEM 199

Query: 340 KE 345
            E
Sbjct: 200 AE 201


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 434 QSQIQSSFWSPG*NNSLSGHLAGMNTGWRFSLFLKSGFSSISGNPI 297
           Q + + S WS   +    GH   +NT   F L L   F+ +  N I
Sbjct: 451 QEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTLYQSFTEVDENSI 496


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 407 SPG*NNSLSGHLAGMNTGWRFSL-FLKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 231
           SP   NS+     G N  W   L +L   +  +SG+ +A+F L   I  T  AHV  I+F
Sbjct: 416 SPIVGNSMVTVANGHN--WMCILNYLTDSYPLLSGSAVAAFTLPSFIGATVFAHVSQIMF 473


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 344 SLFLKSGFSSISGNPIASFELFCAID 267
           + F++SG S++ GN + ++EL   ID
Sbjct: 128 NFFVESGESTLEGNNVINYELAAGID 153


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -1

Query: 516 ILSDFTWSLSKSWPAFVCSWVI*VRWSAITNPVVFLVSRI 397
           I+S   W  S+  P +  +W++ +  +    P+++LV+R+
Sbjct: 469 IISPQLWQ-SRDAPRYYPAWIVQIVVAWFVTPIIYLVARV 507


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +3

Query: 696 PPPXXXPPXXXXXXXXXPXPXXXXPXXXXXXXPXXPPXPPXXXPXXXXXXPP 851
           PPP   PP         P P    P       P  PP PP          PP
Sbjct: 732 PPP---PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +1

Query: 256 LLVTSIAQNSSKDAIGFPEMEENPDLRNKENRQPVFIPARCPDNELFYPGDQKDDWICDC 435
           +  TS   NS   +I  PE ++  +L+NK    P     +   N+   P D     I   
Sbjct: 149 MFTTSRRNNSISGSITIPESDQQINLQNKFLSTP---SIKNNANKSLSPQDSIS--IFGT 203

Query: 436 RPANLYHPGTDK--CW 477
            P N Y   TD   CW
Sbjct: 204 SPFNAYQQNTDNFVCW 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,324
Number of Sequences: 5004
Number of extensions: 54879
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)