Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P23
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    34   0.17 
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    29   6.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   8.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   8.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   8.3  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 678 PXPXXXPPPXXXPPXXXXXXXXXPXPXXXXPXXXXXXXPXXPPXPP 815
           P P   PPP   PP         P P    P       P  PP PP
Sbjct: 34  PPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/68 (26%), Positives = 18/68 (26%), Gaps = 1/68 (1%)
 Frame = +3

Query: 696 PPPXXXPPXXXXXXXXXPXPXXXX-PXXXXXXXPXXPPXPPXXXPXXXXXXPPXXXXXXX 872
           PPP   PP         P P     P       P  PP PP   P      PP       
Sbjct: 27  PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86

Query: 873 XXXXXPXP 896
                P P
Sbjct: 87  CQSYAPAP 94



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 678 PXPXXXPPPXXXPPXXXXXXXXXPXPXXXXPXXXXXXXPXXPPXPPXXXP 827
           P P   PPP    P           P    P       P  PP PP   P
Sbjct: 27  PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 335 LKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 231
           +  G+  +S N   + ++FC+I  +  +H+ NI+F
Sbjct: 37  ISHGYFDVSKNTQITSDIFCSISFSFTSHLSNILF 71


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = +3

Query: 678 PXPXXXPPPXXXPPXXXXXXXXXPXPXXXXPXXXXXXXPXXPPXPPXXXPXXXXXXPP 851
           P     PPP    P         P P    P       P  PP PP   P      PP
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP-PPPPPPRGSPPTGSLPPP 315


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = +3

Query: 678 PXPXXXPPPXXXPPXXXXXXXXXPXPXXXXPXXXXXXXPXXPPXPPXXXPXXXXXXPP 851
           P     PPP    P         P P    P       P  PP PP   P      PP
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP-PPPPPPRGSPPTGSLPPP 336


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = +3

Query: 678 PXPXXXPPPXXXPPXXXXXXXXXPXPXXXXPXXXXXXXPXXPPXPPXXXPXXXXXXPP 851
           P     PPP    P         P P    P       P  PP PP   P      PP
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP-PPPPPPRGSPPTGSLPPP 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,265,709
Number of Sequences: 27780
Number of extensions: 347826
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)