Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P21
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737...    29   4.7  
03_03_0189 - 15287429-15287437,15288006-15288359                       28   8.3  

>07_03_0543 +
           19272389-19272534,19273337-19273496,19273584-19273741,
           19273852-19273945,19274082-19274198,19275119-19275229,
           19275309-19275396,19275615-19275718,19275796-19275867,
           19275950-19276039,19276151-19276308,19276746-19276752,
           19277140-19277194,19277273-19277421,19277543-19277664,
           19277916-19278105
          Length = 606

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = -1

Query: 487 EGNSAVYIGIAQRQSEPVTLVHKLNXVFCEYKSELNGEAIVNNVPWSLGARAGR 326
           E      +GI+ R++EP+  + K++ +F ++  ++  EA  +   WS+G +A +
Sbjct: 144 EAGKVYEVGIS-RKAEPLDHLKKMHTIFLKHLEKIVEEADADAQLWSVGHKADK 196


>03_03_0189 - 15287429-15287437,15288006-15288359
          Length = 120

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 161 VDGGCVGIQRRRGKTQDDKNGLH 93
           VD GC   QRR+  T D ++G H
Sbjct: 93  VDVGCTRRQRRKSATTDSRHGFH 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,752
Number of Sequences: 37544
Number of extensions: 215772
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)