Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_P20
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 39 0.006
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 35 0.073
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 33 0.30
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409... 31 1.2
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 30 2.8
06_02_0314 - 14190245-14191006 29 6.4
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 28 8.4
01_01_0145 + 1327172-1327362,1327491-1328169 28 8.4
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Frame = +1
Query: 199 LPDSAEACFYQTMDKDTAASLEYQVI----SGGQYDVSVKIEAPNRQIIYQQEKMQYDSH 366
LP S C + + + +Y ++ ++VK+ +P ++ E
Sbjct: 36 LPQSGTKCVSEEIQSNVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHNENATVGQF 95
Query: 367 QFTALASGDYKVCF-SNEFSTFSHKLVYMELNVGPEQPLPGVGDHATVLTQLETSAEEIH 543
FT +G+Y CF + S + ++ +G V + +E ++
Sbjct: 96 AFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKLE 155
Query: 544 SALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWSM 651
A+ I + + + REA+ R +E N +V W+S+
Sbjct: 156 VAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSI 191
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 35.1 bits (77), Expect = 0.073
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Frame = +1
Query: 187 LTFXLPDSAEACFYQTMDKDTAAS---LEYQVIS-GGQYDVSVKIEAPNRQIIYQQEKMQ 354
L+F P+ A C Q + ++ + LE + I ++ K+ +P I++ ++K+
Sbjct: 78 LSFCDPEMASPC--QGLLEEVRCNHIHLERRAIPISSRFGTPAKVTSPFGDIVHHKQKVS 135
Query: 355 YDSHQFTALASGDYKVCFSNEFSTFSHKLVYMEL------------NVGPEQPLPGVGDH 498
FT +G+Y CFS + +V + L +V ++ L GV
Sbjct: 136 TGQFSFTTAEAGNYLACFSAD-GRNKRLVVKLNLDWRVGIATKDWDSVAKKEKLEGV--- 191
Query: 499 ATVLTQLETSAEEIHSALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWSM 651
L +LETS + IH L + R +EA R +E N + W S+
Sbjct: 192 ELELVKLETSVQAIHENLLLL-------RSKEANMRDTSEKTNARATWLSI 235
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 247 TAASLEYQVISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCF 408
+++S Q + + VS+++ +P ++ E +Q + FTA +GDY CF
Sbjct: 70 SSSSSSAQPLLPESHRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACF 123
>01_01_0556 +
4090432-4090500,4091414-4092030,4092408-4092533,
4092619-4092895,4093021-4093251
Length = 439
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 237 GQGYGCFIGVPSNFWRTV*RKRKNRSS*QTNYISARED 350
G GC +P +WR + R R+N TN +S+ D
Sbjct: 158 GYTIGCVATLPHLYWRFLHRNRQNTEQESTNQVSSERD 195
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 295 VSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCF 408
+S+++ +P ++ E + + FTA +GDY CF
Sbjct: 84 ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACF 121
>06_02_0314 - 14190245-14191006
Length = 253
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 148 IPXXHGVLSKSVXLTFXLPD-SAEACFYQTMDKDTAASLEYQVISGG 285
I H VLS V L+ + D + ACFY M DT L ++GG
Sbjct: 183 IDFFHAVLSLIVFLSVAMFDHNVGACFYPVMSYDTRQVLTDVPLAGG 229
>03_02_0913 +
12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 271 VISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQ 369
+IS G Y +K E PNR I M+ +SH+
Sbjct: 317 MISDGSYSGLIKCEQPNRNIYEFTATMELNSHR 349
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 450 GTKCWTGAASSWCRRSC-NCSYTVGDI-CR 533
GT AASSW R+C +C+ +GDI CR
Sbjct: 68 GTPRAAPAASSWMDRACPSCNEPIGDIRCR 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,834,437
Number of Sequences: 37544
Number of extensions: 297698
Number of successful extensions: 763
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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